Serratia grimesii: SGBXF1_03518
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Entry
SGBXF1_03518 CDS
T09948
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgri
Serratia grimesii
Pathway
sgri03030
DNA replication
sgri03410
Base excision repair
sgri03420
Nucleotide excision repair
sgri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SGBXF1_03518 (ligA)
03410 Base excision repair
SGBXF1_03518 (ligA)
03420 Nucleotide excision repair
SGBXF1_03518 (ligA)
03430 Mismatch repair
SGBXF1_03518 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgri03032
]
SGBXF1_03518 (ligA)
03400 DNA repair and recombination proteins [BR:
sgri03400
]
SGBXF1_03518 (ligA)
Enzymes [BR:
sgri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SGBXF1_03518 (ligA)
DNA replication proteins [BR:
sgri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SGBXF1_03518 (ligA)
DNA repair and recombination proteins [BR:
sgri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SGBXF1_03518 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SGBXF1_03518 (ligA)
MMR (mismatch excision repair)
DNA ligase
SGBXF1_03518 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SGBXF1_03518 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
SMZ57866
LinkDB
All DBs
Position
1:complement(3702795..3704816)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEGGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPARLEVRGEVFMPQAG
FEQMNEEARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHW
QRLMQFKDWGLPVSDRAQRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVMAERRPADAREILFPLHCPVCGSDVERVEG
EAVARCTGGLICAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGTLEKLFA
ADIEALKEVPDVGEVVAKHTRHFLDEELNQQVIRELVSDEIGINWPAPVVIVAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIE
VIDEAEMIRLLGA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgaacctcactgcgccatcacgaatat
caataccatgtgctggacgcaccggaagtgccggatgcggaatatgatcgtctgatgcgt
gaattgcgtgaactggaaagcgcgcacccggagctgatcaccgcggattccccaacccag
cgtgtgggtgctgctcctctggcagcgttcgatcaggtccgtcacgaagtgccaatgctg
tcgttggataacgtctttgatgaagagagtttcctggcgttttacaagcgagtacaagat
cgcctcaagagcagtgacccactgactttctgctgcgagctgaaactggatggtctggcg
gtcagcttgctgtacgaagggggggaactggttcgtgcggccacgcgaggtgacggcact
acgggtgaaaatattacctccaacgtgcgtaccatccgtgccattcccctgcggctgacc
ggcgacaatatccccgcccgactggaagtgcgtggcgaagtgtttatgccccaagctggt
tttgagcagatgaacgaagaggcgcgccgtaaagatggcaagatcttcgccaacccgcgt
aacgctgccgctggctcgatccgtcagcttgacccacggatcaccgccaaacgcccactg
acctttttctgttatggcgttggtctgctggaagggggcgagttgccgcgtagtcactgg
cagcgtctgatgcagttcaaagattgggggttaccagtcagcgatcgcgctcaacgctgc
actggcagcgatgaggtattggcgttttatcgccaggtagagcaagaccgtacgcaactt
ggctttgatatcgacggcgtggtggtgaagatcgacgatatcgatctgcaagaaacgctc
ggcttcgtggcgcgtgcacctcgctgggcgacggccttcaaattcccggcgcaagaacaa
atcaccgtggtgcgtgaggtagaattccaggttggacgcaccggggcaattacaccggtg
gcacgtctggagccagtgctggttgcgggcgtgattgtcagtaatgccacgttgcacaat
gcggatgaaattgaacgcctgggcctacgtatcggcgacacagtgattgtccgccgcgcg
ggcgacgtgatcccacaagtggtgggggtgatggctgagcgccgcccagcggacgcgcgt
gaaattttgttcccactgcattgtccggtctgcggttccgatgtcgagagggtggagggc
gaagcagtagcgcgctgcaccggcgggcttatctgtgcggcacaacgcaaagaagcactg
aagcactttgtttcccgtcgtgcgttggacgttgacggcatgggcgataaaatcatcgaa
cagctggtggaaaaagagtacgtcaagaatccagccgatctgttccgtctgtccgcaggg
attctgacggggctggatcgcatggggccaaaatcggcgcaaaatctggtcaatgctctg
gagaagtccaagcagaccactttcgcccgtttcctgtatgcactcggcattcgcgaggtc
ggtgaagccacggccgctaatctggctgcccacttcggtacgctggagaagctgttcgcc
gccgatattgaagcgttgaaagaggtgccggacgtcggtgaagtcgtggcgaaacacacg
cgtcatttcctcgacgaagagcttaaccagcaagttatccgggaactggtcagcgacgag
ataggcattaactggccggcaccggtggtaatcgtcgcggaagagatcgacagtccgttt
gccggtaaaacggtggtgctgaccggctcgctgagtcagctttcacgcgatgaggccaaa
gatcgcctgacggcgctgggggctaaggtgagcggcagcgtatcgaagaaaaccgatctg
gtgattgccggtgaagccgctggctccaaactggtgaaagcgcaggagctgggcattgaa
gtcatcgacgaagcggaaatgatccgcctgctgggtgcctga
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