Streptomyces griseoincarnatus: UBV09_23950
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Entry
UBV09_23950 CDS
T11026
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgro Streptomyces griseoincarnatus
Pathway
sgro03030
DNA replication
sgro03410
Base excision repair
sgro03420
Nucleotide excision repair
sgro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UBV09_23950 (ligA)
03410 Base excision repair
UBV09_23950 (ligA)
03420 Nucleotide excision repair
UBV09_23950 (ligA)
03430 Mismatch repair
UBV09_23950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgro03032
]
UBV09_23950 (ligA)
03400 DNA repair and recombination proteins [BR:
sgro03400
]
UBV09_23950 (ligA)
Enzymes [BR:
sgro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UBV09_23950 (ligA)
DNA replication proteins [BR:
sgro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UBV09_23950 (ligA)
DNA repair and recombination proteins [BR:
sgro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UBV09_23950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UBV09_23950 (ligA)
MMR (mismatch excision repair)
DNA ligase
UBV09_23950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UBV09_23950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WPW21548
LinkDB
All DBs
Position
5240008..5242203
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTSVPAQAREQHATLAEQIEEHRFRYYVNDAPVISDAEFDRLLRELEELEER
HPELRTPESPTQKVAGAYETEFTSVQHRSRMLSLDNTFNDEDLAAWAERIHRELGDQAFH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLKGDKVPDVVE
IRGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGV
LEGYKGLTRLSQGYGLLKEWGLPTSPYNKVVDGLEGVREFIAHYGENRHSVAHEIDGVVV
KLDEIPLQGRLGTTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSECP
ECGTPLRPMKEGDVDLRCPNARACPAQLRERLFYLAGRKALDIEHFGYVAAAALTGPLEP
EEPPLKDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKVVTVFANQQGEPKKNA
LAMLENIAAAKERSLARVLTALSIRHVGPVAAEALAREFRSVDRIEQATEEELSATEGVG
PTIAASLKEWFAADWHREIIRKWKAAGVRMEDERSGEDEGPRPLEGLTVVVTGTLENFTR
DGAKEALQNRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFQVLLEEGPD
AAADAALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacgagcgtgcccgcacaagcgcgggagcagcac
gccacgctcgccgagcagatcgaggagcaccgcttccggtactacgtgaacgacgcgccc
gtcatcagcgacgcggagttcgaccgcctgctgcgggagctcgaggagctggaggagcgc
cacccggagctgcgcacgccggagtcaccgacccagaaggtcgccggggcctacgagacg
gagttcacctccgtccagcaccgctcccggatgctgtccctggacaacaccttcaacgac
gaggacctcgccgcctgggccgagcgcatccaccgcgaactgggcgaccaggccttccac
ttcctgtgcgagctgaaggtcgacggcctggcggtcaacctcacctacgagcgcggccgg
ctggtccgcgcggcgacccgcggcgacggccgcacgggcgaggacatcacgcccaacgtc
cgcaccatcgccgagatcccggaccgcctcaagggcgacaaggtccccgacgtcgtggag
atccgcggcgaggtctacttcccgatggagaagttccaggagctcaacgcccgcctggtg
gaggccggcgacaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgccag
aaggacccgagggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggcgtg
ctcgagggctacaagggcctgacccggctctcccagggctacggcctgctgaaggagtgg
ggcctgccgacctccccgtacaacaaggtggtcgacggcctggagggcgtgcgggagttc
atcgcccactacggcgagaaccgccactccgtggctcacgagatcgacggcgtcgtcgtc
aagctcgacgagatccccctccagggacgcctcggcaccacctcccgcgccccgcgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacaccaagctggtgaacatccgggtg
ggcgtcggccgcaccggccgggtcacgccgtacgcgcaggtcgagccggtgacggtggcc
ggctcggaggtcgagttcgccacgctgcacaaccaggacgtggtgaaggccaagggcgtc
ctcatcggcgacacggtggtgctgcgcaaggccggcgacgtcatccccgagatcctcggg
ccggtggccgacctgcgggacggcagcgagcgggagttcgtgatgccgtccgagtgcccc
gaatgcggcacgccgctgcggcccatgaaggagggcgacgtcgacctgcgctgccccaac
gcccgcgcgtgccccgcccagttgcgcgagcggctgttctacctggccggccgcaaggcg
ctggacatcgagcacttcgggtacgtcgccgccgcggccctcaccggcccgctggagccg
gaggagccgccgctgaaggacgagggcgacctgttcgacctcaccgtcgagcagctgctg
cccatcaaggcctacgtcctcgaccaggacagcggactgcccaagcgggacccgaagacc
ggcgaggagaaggtcgtcaccgtcttcgccaaccagcagggcgagccgaagaagaacgcc
ctggcgatgctggagaacatcgccgcggccaaggagcgctccttggcccgggtgctcacc
gccctgtcgatccgtcatgtcgggcccgtcgcggcggaggcgctggcccgcgagttccgc
tccgtcgaccgcatcgagcaggccaccgaggaggagctgtcggccaccgagggcgtcggt
cccaccatcgccgcctccctcaaggagtggttcgccgcggactggcacagggagatcatc
cgcaagtggaaggcggccggagtccgcatggaggacgagcgttccggcgaggacgaaggc
ccccgtccgctcgaagggctcacggtcgtggtgaccgggaccctggagaacttcacccgg
gatggcgcgaaagaggccctgcagaaccggggcgccaaggtgaccggatcggtgtccaag
aagacgtccttcgtcgtcgtgggcgacaaccccgggtcgaagtatgacaaagcgatgcag
ttgaaggtgccggttctgaacgaggacggtttccaggtgctgttggaggagggacccgac
gccgcggccgacgccgccctttcggccgaggagtag
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