Streptomyces griseoaurantiacus: V9K83_09080
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Entry
V9K83_09080 CDS
T10677
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgrs Streptomyces griseoaurantiacus
Pathway
sgrs03030
DNA replication
sgrs03410
Base excision repair
sgrs03420
Nucleotide excision repair
sgrs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V9K83_09080 (ligA)
03410 Base excision repair
V9K83_09080 (ligA)
03420 Nucleotide excision repair
V9K83_09080 (ligA)
03430 Mismatch repair
V9K83_09080 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgrs03032
]
V9K83_09080 (ligA)
03400 DNA repair and recombination proteins [BR:
sgrs03400
]
V9K83_09080 (ligA)
Enzymes [BR:
sgrs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V9K83_09080 (ligA)
DNA replication proteins [BR:
sgrs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V9K83_09080 (ligA)
DNA repair and recombination proteins [BR:
sgrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V9K83_09080 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V9K83_09080 (ligA)
MMR (mismatch excision repair)
DNA ligase
V9K83_09080 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V9K83_09080 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WWY84340
LinkDB
All DBs
Position
complement(2146407..2148602)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAQTTAVPAQARERHVRLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRELQELEER
HPELRTPDSPTQKVAGAYETEFTSVRHRERMLSLDNTFNDEDLAAWTERIARELGSQTYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLHGEEVPDVVE
IRGEVFFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTASRPLHMVVHGIGA
LEGFEGMSRLSQAYDLLGSWGLPTSPYNRVVEDLAGVREFIAHYGENRHSVAHEIDGAVV
KLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDMVVLRKAGDVIPEILGPVADLRDGSEREFVMPADCP
ECGTPLRPMKEGDVDLRCPNSRACPAQLRERLFYLAGRKSLDIEHFGYVAAAALTRPLEP
AEPPLTDEGDLFDLTMEQLLPIKAYVLDQDSGLPKRDPRTGEEKIATVFANQQGEPRKNA
VSMLENIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSVDRIEAASEEELAATEGVG
PIIAASLKQWFAEDWHREILRKWKAAGVRMEEESTGEDEGPRPLEGLTVVVTGTLEHHTR
DGAKEALQSRGAKVTGSVSKKTSFVVVGDSPGSKYDKAMQLKVPVLNEDGFAVLLESGPE
AAAEVALPTEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcccagaccacggcggtgcccgcgcaggcacgggagcggcac
gtccggctcgccgagcagatcgaggagcaccgcttccggtactacgtgaaggacgccccg
gtcgtcagcgacgccgagttcgaccggctgctgcgggagctgcaggagctggaggagcgc
cacccggagctgcgcacgcccgactcgcccacccagaaggtcgcgggcgcctacgagacg
gagttcacctccgtccggcaccgtgagcgcatgctgtcgctggacaacacgttcaacgac
gaggacctggccgcctggaccgagcgcatcgccagggaactcggcagccagacctaccac
ttcctgtgcgagctcaaggtcgacggcctcgccgtcaacctcacctacgagcacggccgg
ctcacccgcgccgccacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtg
cgcacgatcgccgagatccccgaccggctgcacggcgaggaggtgccggacgtcgtggag
atccgcggcgaggtcttcttcccgatggagaagttccaggagctcaacgcccgcctcgtc
gaggccggtgacaagcccttcgccaacccgcgcaacgcggcggccggttcactgcgccag
aaggacccccgggtcaccgcgagccgccccctgcacatggtcgtgcacggcatcggggcc
ctggagggcttcgagggcatgagccgcctctcccaggcctacgacctcctggggagctgg
ggtctgcccacctcgccctacaaccgggtggtcgaggacctcgcgggcgtacgggagttc
atcgcccactacggcgagaaccggcactccgtggcgcacgagatcgacggggccgtcgtc
aagctcgacgagatccccctgcagggccgcctcggctccacctcgcgcgccccgcgctgg
gccatcgcgtacaagtacgcgcccgaggaggtcaacaccaggctcgtcaacatccgcgtc
ggcgtgggccgcaccggccgggtgacgccctacgcgcaggtggagccggtgacggtggcc
gggtccgaggtcgagttcgccacgctgcacaaccaggacgtggtcaaggccaagggcgtc
ctcatcggcgacatggtcgtgctgcgcaaggcgggtgacgtcatccccgagatcctcggc
cccgtcgccgacctgcgcgacggcagcgagcgggagttcgtgatgcccgccgactgcccc
gagtgcggcaccccgctgcggcccatgaaggagggcgacgtcgatctgcgctgccccaac
tcccgcgcctgccccgcccagttgcgcgagcggctgttctacctcgcgggccgcaagtcc
ctggacatcgagcacttcggctatgtcgccgccgcggccctgaccagaccgctggagccc
gccgagccgccgctgaccgacgagggcgacctgttcgacctcaccatggagcagttgctg
cccatcaaggcgtacgtcctggaccaggacagcgggctgcccaagcgcgaccccaggacc
ggcgaggagaagatcgccacggtcttcgccaaccagcagggtgagccgaggaagaacgcg
gtgtccatgctggagaacatcgccgccgccaaggagcgcccgctggcccgcgtgctcacc
ggcctgtccatccgtcacgtcgggcccgtcgcggccgaggcgctggcccgcgagttccgc
tcggtggaccgcatcgaggcggcgagcgaggaggaactggcggccaccgagggcgtcggg
cccatcatcgccgcctccctcaagcagtggttcgccgaggactggcaccgcgagatcctg
cgcaagtggaaggccgcgggcgtccgcatggaggaggagagcaccggcgaggacgagggg
ccgcgcccgctggagggcctcaccgtcgtcgtcaccggcacgctcgagcaccacacccgg
gacggcgccaaggaggccctgcagagcagaggcgccaaggtcacgggctccgtctccaag
aagacgtcgttcgtcgtcgtcggcgacagccccggatcgaagtacgacaaggcgatgcag
ctcaaggtgccggtgctgaacgaggacgggttcgccgtcctgctggagagcggaccggaa
gccgcggccgaagtcgcgcttccgaccgaggagtag
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