Streptomyces gardneri: H4W23_28065
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Entry
H4W23_28065 CDS
T07252
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgx
Streptomyces gardneri
Pathway
sgx03030
DNA replication
sgx03410
Base excision repair
sgx03420
Nucleotide excision repair
sgx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4W23_28065 (ligA)
03410 Base excision repair
H4W23_28065 (ligA)
03420 Nucleotide excision repair
H4W23_28065 (ligA)
03430 Mismatch repair
H4W23_28065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgx03032
]
H4W23_28065 (ligA)
03400 DNA repair and recombination proteins [BR:
sgx03400
]
H4W23_28065 (ligA)
Enzymes [BR:
sgx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H4W23_28065 (ligA)
DNA replication proteins [BR:
sgx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H4W23_28065 (ligA)
DNA repair and recombination proteins [BR:
sgx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H4W23_28065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H4W23_28065 (ligA)
MMR (mismatch excision repair)
DNA ligase
H4W23_28065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H4W23_28065 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
DUF8512
Zn_ribbon_CLPX_N
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QPK48116
LinkDB
All DBs
Position
6170539..6172719
Genome browser
AA seq
726 aa
AA seq
DB search
MAVEQGALPAEAREKHADLAEQVEEHRFRYYGKDQPVISDGEFDKLLRTLEALEEEYPEL
RTPDSPTQKVAGDYETSLTKVDHRERMYSLDNAFDDAELSAWAERVARDVGTSDYHFLCE
LKVDGLAINLTYEKGRLTRAATRGTGVTGEDITPNARTIQGIPDRLSGDRVPDLVEIRGE
VYFPMDAFADLNARRVAAGEQPYANPRNSASGSLRQKDPKVTATLPLRMVVHGIGAREGF
DISRLSETYELLHEWGLPTARHNRVVDSLDGVREFIAYFGENRHSVEHEIDGVVVKLDEI
PLQGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVAGSEVE
FATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECPECGTP
LKPMKEGDIDLRCPNAQTCPAQLRERLFFLAGRQCLDIENFGAVAAAALTRPLEPSEPPL
VDEGDLFDLTIEQLLPIKAYVLDPDSGLPKRDPKTGEEKIVTVFANQKGEPKKNALSMLE
NIAAAKTRPLARFINGLSIRHVGPVAAEALAREFRSLERIEQASEEELAAVDGVGGIIAA
AVKQWFAEEWHREIVRKWRAAGVSLEDEGAGEDVGPRPLEGLTVVVTGTLEKFTRDGAKE
SLQTLGAKVTGSVSKKTAFVVVGENPGSKYDKAMQLKVPVLDEEGFSVLLEQGPEAAREA
AVPVAE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtggcagtcgaacagggggccctgcccgccgaggcacgggagaagcacgccgacctggcg
gagcaggtcgaggagcaccggttccggtactacgggaaagaccagccggtcatcagcgat
ggtgagttcgacaagctcctgcgcaccctcgaagcactggaggaggagtacccggagctg
cgcacaccggattcgccgacgcagaaggtcgccggggactacgagacaagtctgaccaag
gtcgaccatcgcgagcgcatgtattcgctcgacaacgccttcgacgacgccgagttgtcg
gcttgggccgagcgggtggcgagggacgtcggcacgtccgattaccacttcctgtgcgag
ctcaaggtcgatggtctcgcgatcaacctgacctacgagaaggggcggctcaccagggcc
gctacccggggcaccggtgtcaccggtgaggacatcacgcccaacgcccggacgattcag
ggcatcccggaccgcctgtccggtgaccgcgttccggatcttgtggagatccgcggtgag
gtctacttcccgatggacgccttcgccgacctcaacgcccgacgagtggcagcaggcgag
cagccctatgccaacccgcgcaattccgcctccgggtcgctgcggcagaaggacccgaag
gtcacggccacgcttccgctgcgcatggtcgtccacggcatcggcgcccgggaaggcttc
gacatctcccgactgtcggagacgtacgagctgctgcacgagtggggcctgccgaccgcc
cggcacaaccgggtggtcgactcgctcgacggcgtgcgggagttcatcgcgtacttcggc
gagaaccgccactccgtcgagcacgagatcgacggggtcgtcgtcaagctcgacgagatc
ccgctccagggccggctcggctccacggcgcgcgccccccgctgggccatcgcctggaag
tacgcgccggaggaggtcaacaccaagctggtcgacatcaaggtcggcgtcggccgcacc
gggcgcgtcacgccgtacgcgcaggtggagccggtgaccgtggccggctccgaggtcgag
ttcgccaccctccacaaccaggaggtggtgaaggccaagggcgtgctgatcggcgacact
gtcgtgctgcgcaaggccggtgacgtgatccccgagatcctcgggcccgtcgccgacctg
cgggacggcagcgagcgggagttcgtgatgcccgccgagtgcccggagtgcgggacgccg
ctgaagccgatgaaggagggcgacatcgacctccgctgcccgaacgcgcagacctgcccg
gcgcagctgcgcgagcggctgttcttcctcgcggggcgccagtgcctggacatcgagaac
ttcggcgcggtcgccgcggcggcgctcacccgtccgctggagccttccgagccgccgctc
gtggacgagggcgatctcttcgacctcaccatcgagcagctgctgccgatcaaggcgtac
gtcctggacccggacagcgggctgcccaagcgggacccgaagaccggcgaggagaagatc
gtcacggtcttcgccaaccagaagggcgagccgaagaagaacgccctgtcgatgctggag
aacatcgcggcggccaagacccgcccgctcgcccgcttcatcaacgggctctccatccgg
cacgtcgggcccgtcgcggccgaggcgctggcccgtgagttccgctccctggagcggatc
gagcaggcgagcgaggaggagctggcggccgtcgacggcgtcggcgggatcattgcggcc
gcggtgaagcagtggttcgccgaggagtggcaccgcgagatcgtgcggaagtggcgcgcc
gccggagtgtcgctggaggacgagggcgccggggaggacgtggggccgcgtccgctggaa
ggtctcacggtcgtcgtgaccggcaccctggagaagttcaccagggatggcgcaaaagag
tccctccagaccctcggagcgaaggtcaccggttccgtttcaaagaagaccgcctttgtg
gtcgtcggcgaaaaccctggttcgaagtacgacaaggcgatgcagctgaaggttccggtt
ctggacgaggaaggcttctcggtcctgctcgaacaaggtcccgaagccgctcgggaggcc
gcggtaccggtcgccgagtag
DBGET
integrated database retrieval system
