Staphylococcus haemolyticus JCSC1435: SH1047
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Entry
SH1047 CDS
T00250
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sha
Staphylococcus haemolyticus JCSC1435
Pathway
sha03030
DNA replication
sha03410
Base excision repair
sha03420
Nucleotide excision repair
sha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SH1047 (lig)
03410 Base excision repair
SH1047 (lig)
03420 Nucleotide excision repair
SH1047 (lig)
03430 Mismatch repair
SH1047 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sha03032
]
SH1047 (lig)
03400 DNA repair and recombination proteins [BR:
sha03400
]
SH1047 (lig)
Enzymes [BR:
sha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SH1047 (lig)
DNA replication proteins [BR:
sha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SH1047 (lig)
DNA repair and recombination proteins [BR:
sha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SH1047 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SH1047 (lig)
MMR (mismatch excision repair)
DNA ligase
SH1047 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SH1047 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
RNA_pol_A_CTD
PTCB-BRCT
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
BAE04356
UniProt:
Q4L7L9
LinkDB
All DBs
Position
1050279..1052282
Genome browser
AA seq
667 aa
AA seq
DB search
MGNIKSRVNELHDLLNQYGYEYYVQDNPSVPDSEYDKLLRELIDIEEAHPEFKSPDSPTV
RVGGEVQSSFEKVNHDTPMLSLGNAFNEQELRRFDQRIREQVGSVEYMCELKIDGLAVSL
KYVEGRFVQGLTRGDGTTGEDITENLRTIHAIPLKINEPLSFEVRGEAYMPRSSFIRLNE
EKEKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFDATTQSGALDELD
RLGFKTNHERMRVGDIEGVLEYIEKWTKQREQLSYDIDGIVIKVNDIEQQDEMGYTQKSP
RWAIAYKFPAEEVVTTLQDIELSIGRTGVVTPTAILDPVRVAGTTVSRASLHNEDLIHER
DIRIGDSVVVKKAGDIIPEVVKSITERRPEGTLPYSMPTHCPSCDHELVRIEGEVALRCI
NPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYHHNVINDVADIFYLTEDDLLPLERM
GSKKVENLLKAIEDAKANSLEHLLFGLGIRHLGVKASQVLAEKYETMDRLLEVTEEELIS
IHDIGDKLAQSVVTYLENEDIKALIEKLKYKNVNMVYNGIKTSDIEGHPDFKNKTIVLTG
KLQQLTRKEASAWLELQGAKVTSSVTKKTDLVIAGEDAGSKLTKAEKFGTEIWTEEQFVA
KQNEISS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatatcaaaagtcgtgtgaatgaattacatgatttattaaatcaatatggttat
gaatattatgtacaagataatccttcagtgccagatagtgaatacgataaattattaaga
gaattaatagatatagaagaggcacatcctgaatttaagtcacctgattctcctactgta
cgtgtaggaggagaggtgcaatcttctttcgaaaaagtcaaccatgatacaccaatgtta
agtttaggtaatgctttcaatgaacaagaattacgtcgttttgatcaacgtattcgtgaa
caagtcggtagtgttgaatatatgtgtgaattgaaaattgatggattagctgtgtccctt
aaatatgtagaaggtcgcttcgttcaaggtttaactcgaggtgatggtactacaggtgaa
gatatcactgaaaatttacgcaccattcatgctattccattaaagattaatgaaccatta
agttttgaagtgcgtggcgaagcttacatgcctcgtagttcttttataagactaaatgaa
gaaaaagaaaagaatgaagaacaaccattcgctaatccacgaaacgcagcagcgggatcg
ttaaggcaacttgatcccaaattggcagctaaacgtaaattaagtgtattcttatatagt
gttaatgattttacagattttgatgcaactactcagagtggtgcgttggatgaattagat
cgtttaggatttaagacaaatcatgagcgtatgcgcgtgggtgatattgaaggtgtatta
gaatatattgagaaatggacaaaacaacgtgaacaattatcctatgatattgatggcatc
gttataaaagtgaatgacattgaacaacaagatgaaatgggatacacgcagaaatctcca
agatgggcgattgcatataagtttcctgccgaagaagtggtaacaacattacaagatatt
gagttaagtattggtagaacaggtgttgtaacaccaactgcgattcttgatcctgtaaga
gttgctgggacaactgtatctagagcatctttacataatgaagatttaatacatgagaga
gatatcagaattggggatagtgtagtagttaaaaaagctggcgatattataccagaagta
gtgaaaagtattacggaacgccgacctgaaggtacattaccgtattcaatgccaacacat
tgtccgagttgtgaccatgagttggtaagaattgaaggggaggttgcattacgttgtata
aatccaaagtgtcaggctcaacttgtagaggggttgattcactttgtatcacgtcaagcc
atgaatattgatggcttaggaactaaaattatacaacaactctatcatcacaatgtgatt
aatgatgtggccgacatcttctacctaactgaagacgatttattacctttagagcgtatg
ggttccaaaaaagttgaaaatctactaaaagcgattgaagatgctaaagccaattctcta
gagcatctattatttggtttaggaatacgtcatctaggagttaaagcaagtcaagttcta
gctgaaaaatacgaaacaatggatagactacttgaagtaactgaagaagaacttattagt
attcatgatattggagataagttagctcaatctgttgtaacatatttagaaaatgaagat
attaaagcattaattgaaaaattaaaatataaaaatgtcaatatggtttataatggaatt
aaaacttctgatatagaaggtcaccctgattttaaaaataaaacaattgttttaacaggt
aaattacaacaactgacacgaaaagaagcatctgcctggttagaattacaaggcgcaaaa
gttacaagtagtgtaactaaaaaaacagatttagtaattgctggtgaagatgcaggttct
aaattaactaaggcagaaaagtttggtactgaaatttggacagaagagcaattcgtggct
aaacaaaatgaaatatctagttag
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