Strigops habroptila (Kakapo): 115605154
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Entry
115605154 CDS
T08851
Symbol
TDG
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
115605154 (TDG)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shab03400
]
115605154 (TDG)
Enzymes [BR:
shab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
115605154 (TDG)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
115605154 (TDG)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
GAGA_bind
Motif
Other DBs
NCBI-GeneID:
115605154
NCBI-ProteinID:
XP_030335012
LinkDB
All DBs
Position
3:72095480..72106026
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AA seq
407 aa
AA seq
DB search
MEARELGRYYAYLQQAQAFYTFPVHQMMTAVPNMEMMTEQPTLEGIPEPNIAQEPPKEVK
KGGRKRKAKATEPKQPKKPAAKKEKSAKSKGKQEKITDTFKVKRKVDRFNGVSEAELLTK
TLPDILTFDLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSNEQLNHMDDHTLP
HKYGIGFTNMVERTTPGSKDLSSKEFREGGRILMQKLQKYKPRIAAFNGKCIYEIFSKEV
FGIKVKNLEFGLQPHKVPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGI
APNTEVQEVRYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYCDRAPYGSEQCTFSAN
GTAGNPQYCEGPSFGDVPNGQWMTQSFADQIPEFDAGVTREEEGSNA
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggaggctcgggagctgggcagatactacgcttatcttcagcaagctcaagcgttttac
acgttcccggtccatcagatgatgactgcggtgcccaacatggaaatgatgactgagcag
ccgactctagagggcatcccagagccaaacattgctcaggagcctccgaaagaagttaaa
aaaggaggaaggaaaagaaaagccaaagcaactgagccaaagcaacccaaaaagcctgct
gctaaaaaagaaaaatcagccaagtcaaaaggcaaacaggaaaagatcacagatacgttt
aaagtcaaaagaaaagtggaccgttttaatggggtatctgaagctgaacttctgaccaag
actttacctgatatcttgacctttgatctggacattgtaataattggcataaaccctggc
ttgatggcagcttacaaaggacatcattaccctggacctggaaaccatttttggaagtgt
ctgttcatgtctggtctaagtaatgaacagctgaaccatatggatgaccacaccttgcca
cataaatacgggattggatttacaaacatggttgaaaggacaacacctggaagcaaagac
ctctccagcaaagagtttcgggaaggagggcggattctgatgcagaagttacaaaagtat
aaacctcgtatagcagccttcaatggaaaatgtatttatgaaatttttagtaaagaagtt
tttggaataaaagttaagaacttggaatttgggctgcagccacacaaggtgccagataca
gaaaccctctgctacgttatgccatcatccagtgcaagatgtgctcagtttccccgtgca
caagataaagttcattattacataaagctgaaagacttgagggatcaactgaaaggcatc
gcaccaaacacagaggtgcaggaggtgcggtacacgttcgacttgcaacttgcacaagag
gatgctaaaaagatggctgtcaaagaagaaaaatacgatccaggttatgaagctgcgtat
ggaggagcttactgcgaccgtgcgccctatggaagtgaacagtgcactttctctgccaac
ggaactgcaggtaatccacagtactgtgaggggccatcctttggtgacgttcctaatgga
caatggatgacacagtccttcgcggaccagattccagagttcgatgctggtgtgacgcgg
gaagaagagggaagcaacgcgtaa
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