Strigops habroptila (Kakapo): 115608192
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Entry
115608192 CDS
T08851
Symbol
PCDH15
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
shab03037
]
115608192 (PCDH15)
04515 Cell adhesion molecules [BR:
shab04515
]
115608192 (PCDH15)
Cilium and associated proteins [BR:
shab03037
]
Primary cilia and associated proteins
USH complex and associated proteins
115608192 (PCDH15)
Cell adhesion molecules [BR:
shab04515
]
Cadherins
Protocadherins
115608192 (PCDH15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_CELSR2_9th
Cadherin_FAT4_N
RET_CLD1
Fibulin_C
Motif
Other DBs
NCBI-GeneID:
115608192
NCBI-ProteinID:
XP_030342444
LinkDB
All DBs
Position
5:39466684..40272034
Genome browser
AA seq
2076 aa
AA seq
DB search
MLQRFCLWKWLAVGVAVATILACCLAQNDEDWQYEDCKLARTGPPATIVPIDEESRNGTI
LVDNMLIKGTAGGPDPTIELSLKDNVDYWVILDPIRQTLYLNSTGRILDRDPPMSIQSIV
VQVQCVNKKVGTIINHEVRIVVRDRNDNSPQFQQQQYYVAVNELTPVGTTIFTGFSGNNG
ATDIDDGPNGQIEYVIQYNPNDKTSNRTFDIPLTLSGAVVLRERLNYEEKTRYFVIVQAN
DRAQNLNERRTSTTTLTVDVLDGDDLGPVFLPCVLVNNTRDCRPLTYQASLPELTDPEHV
NPISVTPPIQAIDQDRNIQPPSDRPGILYSILVGTPEDYPQYFHMNLTTAVLTLLKPINR
DLHQKFDLVIKAEQDNGHPLPAFANLHIEVLDENNQKPYFTRSTYEGFILESSPVGTTIS
DNHNLTSPLQIVVLDNDVEETKDPQLHLFLNDYNTFFTVTQSGITRYLTLLQPVDREVQQ
LYTFSMTASDGVQESIPVTVNILVIDANDNSPAFSNISYNVKIYTDMRPGEGVIKLTAVD
ADEGPNGQIVYEILAGDQGDFIINDRTGLITIAPEVVLSVGRSYALTVKASDSAPPAQRR
SSITTVYIEVLPPNNQSPPRFPQLMYSLEVSEAMRIGAILLNLQAFDREGDPIRYLIQNG
DPQQVFNLSQSSGLLALGKPLDRESTDRYILIVTASDGRPDGTSTATVNIVVTDVNDNGP
VFDMFLPKNLSVQEEEANAFVGQVRATDPDAGVNGQVHYSLANFNNLFRITSNGSIYTAV
KLNREVRDYYELIVEATDGAVDPRRSTLTLAIKVLDIDDNSPVFTNASYTVCVPENLPPG
TVFLQIEAKDIDLGSDVNYRIRTQEALQYFALNKYTGELSLLKSLDYESFSDTEATFTFL
VEAFDSKGTMPPGLATVTVRVKDMNDYSPVFSKKLYRGMVAPDAVKGTVITTVSAEDQDP
PGTPASRVRYKVDVVQFPYSASIFDVEENSGRVVTRVNLNEEPSTVFKLVVIAYDDGDPV
KFNTTTVEIAVLQPSVIPRFTQDEYRPPPVSESAPKGTVVTIVTAAALNQTIVYSIVSGN
EEDVFAINNRTGMISVKKSLDYESVKSYELRVQADSLQVVRSNLRVPSKSNTAKVFIEVK
DENDHAPVFTKKMYIGGVSEDAKMFSSVLKVKADDKDTGNYSAMQYRLIIPPIKDGKEGF
VIEAYTGLIKTAMLFKNMRRSYFKFQVIATDDYGKGLSSKAEVLVSVVNQLDMQVIVSNV
PPTLVEQNKDQLIGILERYVQDQIPGATVVVESIGARRFGDGYSEEDYTKSDLMVYAIDP
QTNRAIMRNELFKKLNKKEGKRKEETRFLDGKLLDINKEFQPYLGQGGRILEIRTPDVVA
NVKKQAQAVGFTEGALLALAVIIILCCMPAILIVMVSYRQFKERQAECAKTARIQMALPA
GKPASSTANNLYEELGDNTMRGYAQQEQQQLLRPSLLRPEELSMESGIDPGQEYYGQDYY
SYEHGYELPQYGSRRRLLSPSGMYDEYGEVMVENDGGYYYSPHGSTAEEGMSQGRGPSSR
GISQRAGAQIEGRPLGGGMDLRHGRVYRTSQRKRKLKAVMHLSRVAVSAHKTVGKTESAH
SPWKKAKIFPMILHKVKGGRKDSSYAKLTSARQVDGEKSMIIRGSYFQKSTDDRPSMRKL
NHVLKRISVSRKFQEPTSKDLVHARGKGEEEYERDEAKSGVSINITAESEHEDSDYEKKK
KKRRKYTSDESSVKSSSSGSESEDKDYLKVTLDQDEATESTVDSDEETGHDFGDSDDDSG
SSSNSESEEDSSEEDDDEEDSDSDEDGSLSKSSSTRNSCNKSGSSGSSSRKSTERSSIKS
REGSSCGRARQCSRKSSISSNVSGSERDTSYRKASGSSYESKTSSASLEIEETIEEVSEE
DEQVDVEQVSAIPDEIAGNSNKAVSETSANAKMYATDEDKKGKSAVNSKDSVGESTEEAD
TDASDREEAISKNESSCLESEISVTSKGTGGTKSTTSATSGKTTTSPESENQSSDTNTKR
KKIKKKMSQENSQSQSDETLDTAVTESETAGNSTSF
NT seq
6231 nt
NT seq
+upstream
nt +downstream
nt
atgttacagcgattttgtctctggaaatggttagctgtaggggttgcagttgctactatc
ttagcatgttgtttggcccagaatgatgaagactggcaatatgaggattgcaaattggcc
agaacaggtcctccagccacaatagttcctattgatgaagaaagtcggaacggcactatc
ctggttgacaatatgctgatcaaagggacagcaggagggccagaccccaccattgaactc
tccttaaaggacaatgtagattactgggtgatcctcgatcctatcagacagacattatac
ctaaatagcactggccgaattctggacagagatcctccaatgtccattcaatccattgtg
gtgcaagtccagtgtgttaacaaaaaggttggcaccattatcaaccatgaagtacggatt
gtggtgagagataggaacgataactcgcctcagttccagcagcagcaatactatgtggca
gtaaatgagctaactcccgttggaacaaccatttttacaggattttctggaaacaatggt
gctactgacattgatgatggtccaaatggccagatagaatatgtcatccagtacaatcct
aatgacaagacttccaacaggacctttgatattcctctcactttgtctggagcagtagtt
ctacgggaaagactaaattatgaagaaaagactcgttattttgtcattgttcaagcaaac
gaccgagcccaaaatcttaatgagcgacggacaagtacaaccacactgacagtagatgtg
cttgatggggatgacttgggcccagtgtttcttccttgtgtcttggtgaacaatactcgt
gactgtagacctctcacctaccaagcaagcttgccagaactgactgatcctgaacatgtg
aaccccatcagtgtcactccacccatacaagccatagatcaggaccgaaatattcagcct
ccttctgatcgaccgggcatcctctattccatcctagtaggtactcctgaagattatcca
cagtatttccatatgaatctcacaacagctgtactgacactcctaaagccaataaacagg
gatttacaccagaagtttgacttggttattaaggctgaacaagacaatggccatcctctt
cctgcctttgccaatctacatattgaagtccttgatgagaacaatcagaaaccttacttc
acaagatctacatatgagggcttcatcctcgaatcctctccggtcgggacgaccatctct
gacaaccacaatctgacttctccactacaaatcgtagtgttggacaacgatgtggaggag
accaaggatccccagctccatctctttctgaatgattacaatacgtttttcactgtgact
cagagtggcatcacccgctacctcactttgctgcagcctgttgacagagaagtccagcaa
ctttacaccttctcgatgacagcttctgatggtgtacaggagagtatcccagtgactgtc
aatatcctggtgattgatgcaaatgataattccccagccttctccaatatatcatacaat
gtcaagatttatacagatatgaggcctggggaaggcgttataaagctcaccgctgtagat
gcagacgagggacccaatggacagatagtatatgaaattttggctggggatcagggagac
ttcatcatcaatgaccgaacaggccttatcaccattgctccagaagttgtattgtcagtg
gggcgatcctatgctctcactgtcaaagcatctgatagtgctcctcctgcacagagaagg
agctctattactactgtttacattgaggtccttccacctaacaaccagagccctccccgc
tttccccagctgatgtacagccttgaagtcagtgaggccatgagaattggagccattttg
ttaaacctgcaggcttttgatagagagggtgaccctataagatacctcattcagaatgga
gatcctcaacaagtttttaatctctctcaaagttctggactgctagccttaggaaaaccc
ttggacagagaaagcaccgatcgctatattctgattgttacagcctcggatggcagacca
gatgggacctcaactgctactgttaatatagtggtgacggatgtaaatgacaacggacca
gtttttgatatgtttctacctaaaaacctgtctgtacaggaagaggaagccaatgctttt
gttggtcaagtaagggctacagatccagatgccggtgttaatggtcaagttcattacagt
ttggcaaacttcaacaatcttttccgaatcacctcaaatggtagcatttatacggcagtt
aaactgaacagagaagtaagggactattatgaacttattgttgaagcaacagatggagct
gtggacccccgccgttcaacactaactttagcaatcaaggtgctggatatcgatgacaac
agccctgtttttaccaatgcttcctatactgtctgtgtgccagaaaatctaccaccaggc
actgtcttcctgcaaatagaggcaaaggatattgatcttggttctgatgttaactatcga
atacgaacacaggaagcactacagtattttgcactgaacaagtatacaggtgaattatcg
cttttgaagtccttggattacgaatcgttctctgacacagaagcaactttcacctttctt
gtggaagccttcgacagcaagggcactatgcctcctggtcttgctactgtcacagtgaga
gtaaaggatatgaatgattactctccagtatttagcaaaaagctctacaggggaatggtt
gctcctgatgcagtcaagggtactgttatcactaccgtttcagctgaggatcaagatcct
ccaggcacaccagcaagtcgagtccgatacaaagtagatgttgtccagtttccttacagt
gctagtatttttgacgtggaggaaaactcaggacgtgtagtaacccgagtaaacctaaat
gaagagccaagtacagtgtttaagctagtggtcattgcatatgatgatggggatcctgtg
aagttcaacaccaccactgtagaaattgctgtactgcagccttcagtaattccacggttt
acacaggatgaatacagacccccaccagtgagtgaaagtgcaccaaaaggaactgtggtc
accattgttacagcggctgccttgaaccagacaattgtatattcaattgtttcaggaaat
gaagaggatgtgtttgctattaataatagaacaggcatgatctcagttaaaaagtctctg
gattatgaaagtgtgaaaagttatgagcttcgagttcaagcagactccttacaagtggta
cgatccaatctgcgtgtcccttccaaaagtaatacagccaaggtatttattgaagtgaag
gatgaaaatgaccatgcacctgtctttacaaaaaaaatgtacattggaggggtatctgaa
gatgctaaaatgttttcttctgtgcttaaagttaaggcagatgataaagacactgggaat
tacagtgccatgcaatacagactcatcattcctccaatcaaggatggtaaagaaggtttt
gtgattgaagcttacactgggctaataaaaactgctatgctcttcaaaaatatgagaaga
tcctatttcaagtttcaggtcattgcaactgacgattatggaaaaggactgagcagcaaa
gcagaagtacttgtctctgtggtcaatcagttggatatgcaagtcatcgtctctaatgtt
cctcccacccttgtggaacaaaacaaagaccaacttatagggattttggaacggtatgtc
caagatcagattcctggtgcaacagttgtggtggaatcgattggtgcgcggaggtttggg
gatgggtactctgaagaggattataccaagtctgacctcatggtctatgcaattgaccct
caaacaaatagagctataatgaggaacgaactttttaagaaactgaataagaaggaaggg
aagagaaaggaagagaccaggttcctggatggcaaactgctggatatcaataaagagttt
cagccatacctggggcagggcggacgcatcctggagatccgcaccccagatgtggtagcg
aatgtcaagaagcaggcacaagctgtaggcttcacggaaggcgcgttacttgctctggcc
gtcataatcatcctttgctgtatgccagctattttaatagttatggtcagctacagacaa
ttcaaagaacggcaggctgaatgcgccaagactgcaagaatccagatggctttaccagca
ggcaaaccagcaagcagcactgccaataacctctatgaagagcttggtgataacaccatg
cgaggatatgcacagcaagagcaacagcaattgctgagaccttctcttctcagaccagag
gagttaagtatggaatctggaattgacccaggacaggaatactatgggcaagattactac
agctatgaacatgggtatgaacttcctcaatatgggagccgacgacgactgctgtctcct
tcggggatgtacgatgagtatggggaagtcatggtggagaatgacggtggctactactat
agtccacatggatcaacagcagaagaggggatgagtcaaggcagaggtccttcaagcaga
ggtataagccagagagcaggggctcaaatagaaggtagacctttaggaggtgggatggat
ctaagacatggaagagtgtataggaccagccagcgaaaaaggaaactaaaagcagtgatg
catttaagtcgcgtagcagtcagtgctcacaaaaccgtaggaaaaactgagtctgctcat
tctccgtggaagaaagcaaagatattcccaatgattctgcataaagtgaagggtggtagg
aaagattccagttatgccaagttgacgtcagctcgccaagtggacggtgagaaaagtatg
attatcaggggaagttactttcagaaatcgacagatgacaggccttcaatgagaaaacta
aatcatgtgttaaaacgcattagtgtctccagaaaatttcaagagcctactagcaaagat
ttagtgcatgcaagaggaaaaggagaggaagaatatgaaagagatgaagcaaaatcagga
gtttcaataaatatcacagcagagagtgagcatgaggatagtgattatgagaagaagaaa
aagaagagaagaaaatacacttcggatgaatcatcggtgaaaagtagcagctctggctca
gagtcagaagataaagactacttgaaagttactctggaccaagatgaagccactgaaagt
actgtggactcagatgaagaaactgggcatgactttggggattctgatgatgactctgga
tccagctctaacagtgaatcagaggaggactcatctgaagaggatgacgatgaggaagac
tctgacagtgatgaagatggtagcctgtcaaagagctcatctacacgaaattcatgcaac
aaatcagggagtagcgggtccagcagtagaaaaagcactgaaaggtccagtataaaaagt
cgggaaggtagctcttgtggcagagcgaggcaatgcagccgtaaatcaagtattagctct
aatgtatcaggtagtgaaagggatacgagctacaggaaagcttcaggatccagctatgag
agcaaaacctcttctgccagccttgaaatagaagaaacaatagaagaagtgtcagaagaa
gatgaacaagtggatgttgagcaagttagtgcaatccctgatgagatagcaggtaactca
aataaggcagtttctgaaacatctgccaatgcaaaaatgtatgctactgacgaagacaag
aaaggaaaatcagctgttaatagtaaggatagtgtgggtgaaagtacagaagaggctgat
acagatgctagcgacagggaggaagctatcagtaagaatgaatcttcttgtctagaaagt
gaaatcagtgttacttccaaaggaactggagggacaaaaagcacaactagtgccacttct
ggtaaaactactacttctcctgagtctgagaatcaaagttctgacaccaacacaaaaaga
aagaaaataaaaaaaaagatgtcccaggaaaacagtcagtcccagtcagatgagaccctg
gatactgccgttacagagtcagagactgctggtaattctacatccttttaa
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integrated database retrieval system
