KEGG   Strigops habroptila (Kakapo): 115615850
Entry
115615850         CDS       T08851                                 
Symbol
AFF4
Name
(RefSeq) AF4/FMR2 family member 4 isoform X1
  KO
K15185  AF4/FMR2 family member 4
Organism
shab  Strigops habroptila (Kakapo)
Pathway
shab03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:shab00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    115615850 (AFF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shab03021]
    115615850 (AFF4)
Transcription machinery [BR:shab03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     115615850 (AFF4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int
Other DBs
NCBI-GeneID: 115615850
NCBI-ProteinID: XP_030360353
LinkDB
Position
12:8575751..8628260
AA seq 1185 aa
MERGRMGAAVAIGNGSGNMNREDRNVLRMKERERRNQEIQQGEEAFPPNSPLFAEPYKVT
SKEDKLSSRIQSMLGNYDEMDDLIGDRSVQKLVGIPKPTVPSAPDDKANQSYFGDQRHNP
SSHQSSKWTPVGPAPSTSSQSQKRSSGLQSGHSAQRGSGNNSGSSGQRHDRDSYSSSSSR
KKSQHGSEHSKPRSSSPGKPSAVSSLSSSHSRSHGNDHHSKEHQRSKSPRDPDANWDSPS
RVPSFSSGQHSNQSFPPSLMSKSSSMLQKPTAYVRPMDGQESMEPKLSSEHYSSQTHSSG
VNELKPNSKAHLTKLKIPSQPLDASASGEVSCVDEILKEMTHSWPPPLTAIHTPCKTEPS
KFPFPTKESQQSSFGTGEQKRYNPSSKTSNGHQSKSCESNQTDMLKDDLKLSSSEDSDGE
QDCDKTVPRSTPGSNSEPSQHNSEGADNSRDDSSSHSGSESSSGSDSESESSSSDSEANE
PSQSASPEPEPPPTNKWQLDNWLNKVNSHKVSPASSVDSNIPSSQGYKKEGRDQGTGSGY
TDQSGSKDSISSTPGRDSKPTQKGSEGSRGRQKSPAQSDSSTQRRTVGKKQPKKAEKTSV
EEPRGGLKIESETPVDMATNIPSNRHKAATKGSRKPNIKKEPKSSPRPTTEKKKYKASSK
SAQKSREFIETDTSSSDSDENESLPPSSQTPKYSESNRTPVKSSMEEDDSFFRQRMFSPM
EEKELLSPLSDPDERYPLIVKIDLSLLSRIPGKPYKDADAPKVEKKTVPEKHTRESQKQP
SDKSSTKGKRKHKQNEDENRASESKKTKLEEKAPSGHKTSSSRESSKPSAIKEKDLLPSP
AAPVLQKDAKQEHGSRKRTVSQSSSLKSSSNLGKESSGGSKGSSSSKQKKTEGKGSSSAK
ETKEKILNNSSSCPPVSAQSTESSKSRRAKLVFDDRTYSADHYLQEAKKLKHNADALSDR
FEKAVYYLDAVVSFIECGNALEKNAQESKSPFPMYSETVELIKYTMKLKNYLAPDATAAD
KRLAVLCLRCQSLLYLRLFKLKKESALKYSKTLTEHLKNSYNNSQAPSPGMGSKPVGMPS
PVSPKLSPGNSGNYSSGAANPSGSGSSVTIPQRIHQMAASYVQVTSNFLYATEIWDQAEQ
LSKEQKEFFAELDKVMGPLVFNSSIMTDLVRYTRQGLHWLRLDAK
NT seq 3558 nt   +upstreamnt  +downstreamnt
atggagcggggcaggatgggtgctgcggtggccataggaaatggctctggcaacatgaac
cgtgaagaccggaatgtgctgcgaatgaaagaaagggaaaggcgaaatcaagaaattcag
cagggtgaagaagccttcccacccaactctcctctctttgccgaaccctacaaagttacc
agcaaggaagacaagttgtctagtcggattcagagcatgcttggtaattatgatgaaatg
gatgatcttataggagaccgctcagtgcaaaagcttgttggaattcccaaaccaaccgta
ccatcagcaccagatgacaaagcaaaccaaagttactttggtgatcagagacataatccg
agctcacatcagagcagcaaatggactcctgtaggaccagcacctagcacttcctcacaa
tcccagaaacggtcctcaggtttgcagagtgggcacagcgctcagcgcggcagcggcaat
aacagcggcagcagcggccagaggcacgaccgcgactcctacagtagcagcagcagccgc
aaaaaaagccagcatgggtctgaacactccaaaccacgttcttccagcccaggaaaacca
tctgctgtttcttcgttgagctccagccattcgagatctcatggaaatgatcaccacagt
aaagaacatcaacgttcaaagtctccccgggatcctgatgccaactgggactctccctct
cgtgtaccctcattttcaagtggacaacactctaatcagtcttttccaccttcactaatg
tccaagtccagttcaatgttgcagaaacccacagcgtatgtaaggccaatggatgggcag
gaatccatggaaccaaagttatcttccgaacactacagtagccagactcacagcagcggg
gtgaatgagctgaagcctaacagcaaagcacatctaaccaagctgaaaatcccttctcaa
ccactagatgcatcagcatctggtgaggtgagctgcgtggatgaaattctaaaagagatg
acccattcttggcctcctccactgactgctattcatacaccatgcaaaactgaaccgtca
aaatttccttttccaacaaaggagtctcaacagtccagttttggcactggggagcagaaa
cggtataatccttcatcaaaaacatccaatggtcatcagtccaaatcatgcgaatcgaac
cagacagatatgttgaaagatgacttaaaacttagcagtagcgaagacagcgatggagag
caggactgcgataagacagtgccaaggagcacacctggaagtaattctgaaccttcacag
cataacagtgaaggagcagataattcacgggatgactcgagcagccatagtggatctgaa
agcagttcaggatctgactctgaaagtgaaagcagttccagtgacagtgaagctaatgaa
ccatcccagagcgcatcccccgagccagagccaccaccaacaaacaagtggcaactggat
aactggttgaacaaagttaattcacataaagtatcaccagcttcttccgtggacagcaat
attccatcttcccaaggctataaaaaggagggacgggatcagggcacagggagcggatac
actgatcaaagtggatccaaggattccatttcctctacaccagggcgagattccaaaccc
acccaaaagggctcggagggcagtcgtggcaggcagaaatcgcctgcccagagtgacagc
tccacacagaggaggactgtaggtaaaaagcagcccaaaaaagcagaaaagacatctgtt
gaagagcctagaggaggtcttaaaatagaaagtgaaaccccagtagacatggcaacaaat
ataccttccaacaggcataaggcagccacaaaaggctccagaaaacccaatataaagaaa
gagcccaaatcttcccctcggcctacaacagagaaaaagaaatacaaggcttcaagcaaa
tctgcccagaaatccagggaattcatagaaacagatacctcatcctctgattcagatgaa
aatgagagcctgcctccttcctcacaaacacccaaatactctgagagcaataggactcct
gttaaatcttccatggaggaggatgacagcttttttcggcaaagaatgttctctcctatg
gaagagaaagagcttctttcaccactcagtgatcctgatgaaaggtaccccctcattgtg
aagattgacctgagcctcttatcaagaataccagggaagccttacaaggatgctgacgca
cccaaagtggaaaagaaaaccgtgccagagaagcacacgagagaatcccagaagcagccg
tctgacaagagttctacaaaaggcaaaaggaaacacaagcagaacgaggatgaaaacaga
gccagtgaaagcaagaaaacaaaactggaagaaaaagctccatcaggacacaagacttcc
agcagcagggagtcctcaaagccaagtgctattaaagaaaaggatttgctgccatctcct
gctgccccagtcctgcagaaagatgccaagcaagaacatggctcccggaagaggacggtc
agtcagtcctcatccctgaagtccagcagcaaccttggcaaggagagcagtggtggcagt
aaaggcagctcgtcttccaaacagaagaaaacagagggcaagggttctagcagtgctaaa
gaaaccaaggaaaagattctgaacaattcatccagctgccctcctgtgtctgctcagtct
acagagagttccaagtcaagaagagcaaaacttgtttttgatgataggacttactcagct
gatcattatttgcaagaagcaaagaagctaaaacataacgctgatgcattgtctgacagg
tttgagaaggctgtctactacctagatgctgtagtgtcgttcattgagtgtgggaatgca
ttggagaaaaatgctcaggaatccaagtccccgttccctatgtattcagaaactgtggaa
ttaatcaaatacactatgaagctgaagaattacttggcaccggatgctacagctgcggat
aaaaggctagcagtgctttgcctgcggtgccaatctctgctatacctaaggcttttcaaa
ctgaagaaggaaagtgcattgaaatattctaaaactctgactgaacatctgaagaattcc
tacaataattctcaagcaccgtcacctggtatgggaagcaagcccgtgggtatgccatct
ccagtctctccaaagctgtctccagggaattcaggaaattactcttccggggcagccaac
ccttcaggaagcgggtcctccgtgacgatccctcagaggatccatcagatggctgccagc
tacgtccaggttacatccaacttcctctatgccactgaaatttgggaccaagccgaacag
ctgtctaaagaacagaaagagttctttgctgaactggataaagttatgggccctctggtt
tttaactcgagcatcatgacagacctagtgcgttacacccgtcagggattacactggttg
cgcctggatgccaagtga

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