Strigops habroptila (Kakapo): 115616900
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Entry
115616900 CDS
T08851
Symbol
TRAF2
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04010
MAPK signaling pathway
shab04137
Mitophagy - animal
shab04141
Protein processing in endoplasmic reticulum
shab04210
Apoptosis
shab04217
Necroptosis
shab04621
NOD-like receptor signaling pathway
shab04622
RIG-I-like receptor signaling pathway
shab04920
Adipocytokine signaling pathway
shab05132
Salmonella infection
shab05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
115616900 (TRAF2)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
115616900 (TRAF2)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
115616900 (TRAF2)
09143 Cell growth and death
04210 Apoptosis
115616900 (TRAF2)
04217 Necroptosis
115616900 (TRAF2)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
115616900 (TRAF2)
04622 RIG-I-like receptor signaling pathway
115616900 (TRAF2)
09152 Endocrine system
04920 Adipocytokine signaling pathway
115616900 (TRAF2)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
115616900 (TRAF2)
09171 Infectious disease: bacterial
05132 Salmonella infection
115616900 (TRAF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115616900 (TRAF2)
04121 Ubiquitin system [BR:
shab04121
]
115616900 (TRAF2)
Enzymes [BR:
shab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115616900 (TRAF2)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
115616900 (TRAF2)
Ubiquitin system [BR:
shab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
115616900 (TRAF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
Sina_ZnF
zf-C3HC4_4
zf-TRAF_2
zf-C3HC4_2
zf-RING_6
zf_C2HC_14
zf-C3HC4_5
zf-RING_10
Thioredoxin_3
Paramyxo_NS_C
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
115616900
NCBI-ProteinID:
XP_030362540
LinkDB
All DBs
Position
15:11659812..11684367
Genome browser
AA seq
485 aa
AA seq
DB search
MALCAQALEIQPELFVHMAAANSTPPGSLDLNQPGFAKEILGTKLEVKYLCSDCKNILRR
PFQAQCGHRYCSYCLKKIISTGPQKCASCIQEGIYEEGISILETSSAFPDNAARREVESL
PAVCINSGCTWKGTIKEYEAHDEVCPEFPLTCEGCGKKIPREKFRDHVKSCGRSKVPCRF
EVVGCAEVVEKEELLEHERKCLAEHLYMLLSFVLSLKAGAGDLKPLPALSSSQSAPLLAE
NSESEVSRSLELLGRCEALERKTVTFENIVCVLNREVERVSLTAEAYNRQHQLDQKKIEA
LSNKVRQLERSIGLKDLAMAEMEEKIRNMEASTYDGVFIWKITEFARKRQEAITGRSPAI
FSPAFYTSKYGYKMCLRVYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLD
QNNREHIIDAFRPDVTSSSFQRPVTEMNIASGCPLFCPVSVMEAKNSYVRDDAIFIKAIV
DLTGL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgctctgtgcccaggctctggagatccagccagaactttttgttcacatggcagca
gcgaactccaccccacctggctccctggacctcaaccagccgggatttgcaaaggagatc
ctgggaactaaactggaggtcaaatacctctgctccgattgcaagaacatattgaggcgg
ccgttccaagcgcagtgtgggcatcgctactgctcctactgcctgaagaaaattataagc
actgggcctcagaagtgtgccagctgtattcaggaagggatctacgaagagggaatttct
attttggaaacaagctcagctttcccagacaacgcagctcgtcgggaggtggaaagtctg
cctgctgtctgtattaacagtggctgcacttggaagggcactattaaagaatacgaggct
cacgatgaagtctgccctgaattcccgctgacttgcgaaggctgtgggaagaagatccca
agggagaagtttcgggaccatgtgaagagttgtggcagatctaaagtgccgtgcagattt
gaggttgttggatgtgctgaggtggtggaaaaagaagagctgctagaacatgaaaggaag
tgcttggcagagcatctttacatgctgctgagttttgtgctcagcctcaaggccggggct
ggagacctgaagccccttcctgccctttcctcatcgcaaagcgccccgctactggcagaa
aactcagagtcagaggtttccaggtccctggagctcctgggaagatgtgaggcccttgag
aggaaaactgtgacctttgagaacattgtctgtgtgctcaatcgggaggtggaaagagtg
tctctgacagctgaagcctacaaccggcagcatcagctggaccagaagaagatcgaagca
ctgagtaacaaggtccggcagctggaaaggagcattgggctcaaagatctggccatggcc
gagatggaggagaagatccgcaacatggaagcttccacctacgatggtgttttcatctgg
aagataacagagtttgcccggaagcgccaggaggccatcacaggccgctctcctgccatc
ttctctccagctttctacacgagcaagtacggctacaagatgtgtctgcgtgtttacctg
aacggggacggcaccgggcgcgggacccacttgtccctgttctttgtggtgatgaagggt
ccgaacgatgcgctgctccggtggcccttcaaccagaaggtaacgctgatgctcctggac
cagaacaaccgggagcacatcatcgacgccttccgacctgacgtgacctcctcgtccttc
cagcgacctgtcacagaaatgaacattgccagtggctgccccctcttctgccccgtctcc
gtgatggaagccaagaactcctacgtgcgggatgatgccatctttattaaagccatcgtt
gatctcacgggcctctaa
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