Strigops habroptila (Kakapo): 115617619
Help
Entry
115617619 CDS
T08851
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03440
Homologous recombination
shab03460
Fanconi anemia pathway
shab04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
115617619 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
115617619 (BRCA1)
03460 Fanconi anemia pathway
115617619 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
shab01009
]
115617619 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shab04121
]
115617619 (BRCA1)
03036 Chromosome and associated proteins [BR:
shab03036
]
115617619 (BRCA1)
03400 DNA repair and recombination proteins [BR:
shab03400
]
115617619 (BRCA1)
Enzymes [BR:
shab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
115617619 (BRCA1)
Protein phosphatases and associated proteins [BR:
shab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
115617619 (BRCA1)
Ubiquitin system [BR:
shab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
115617619 (BRCA1)
Multi subunit type E3
BRCC complex
115617619 (BRCA1)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
115617619 (BRCA1)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
115617619 (BRCA1)
BRCA1-A complex
115617619 (BRCA1)
BRCA1-B complex
115617619 (BRCA1)
BRCA1-C complex
115617619 (BRCA1)
BRCA complex
115617619 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
115617619 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT_assoc
BRCT
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
BRCT_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-Nse
BRCT_3
RING_XB3-XBAT31
zf-RING_6
zf-RING_10
TRAF3_RING
zf-ANAPC11
zf-rbx1
Zf_2nd_IFT121
Motif
Other DBs
NCBI-GeneID:
115617619
NCBI-ProteinID:
XP_030364219
LinkDB
All DBs
Position
19:complement(2142884..2163544)
Genome browser
AA seq
1819 aa
AA seq
DB search
MDFSVIAVGDVQNVLSAMQKNLECPICLEMIKEPVSTKCDHIFCRFCMFKLLSRKKKGVT
ECPLCKTEVTKRSLKENSRFKQLIEGLLETIHAFELDTGVEFLNSRHFPKPSTEATGAEF
LCKEGSVIQSKGFRNRKSAKENGQENCTLQEANVDTQLTDSRVKRRSPRNKPQKCGSQKG
IYIEFGSDSSEEVFKQSSVTGLEDKAALQISAQEKLEELSAEMGNEYSCNAQHDKLGAEE
VILPNVIGEGDSSKEVLSKKSTRNITECAQPRRVNMTEYQSSPFSVLAGDLLTEQCDTIG
NASPLRSGDASFFKSTEEMDAEQTQCTRKSEEFDLKDSSESRLDKSKEIDVAQSAEAVEM
GEPEHDSSHEKELPLEKLQPEPLHCALNPVSRKRLKRSIQKVNEWFSKSNEILSSSSSQD
DSAGAADLSREGDACLSDKDSCISEKTDPMVDSVEIAVLERNERWSKQTADSIKDKIFGK
TYKRERKSNPPVIFRDILPPAKKEDVAADKCLDRSSKDSLKRKRRIPRVLQPEDFIRKKD
TEEADGYPHTGDAEKKRCDESSAVSASRLSANREDNTLAELEERGGSIWKKATEKVPGKH
CAGELELSGCDQKSTKKSSAAKRCRRSTRSMCALQLVADRSSGSADPAEPQIDSYPSSEE
PRKADSEQRQVRRSRRLQLLSEEMTKETGKGVEMKGARKYVSDHERAGFGVQTNALVHTS
ECKDLGEPWGMSSSKPLANLKGGDLEANEIQISLKNSSDNAEIDRTLFSHTSSCQHSICS
SFVPDTGSQEGEIQGSPLLLQFPPTAVVQTASHPTEEMTESCTAFPQDSGHDTPSVPGDL
RTEKLPVAESVLELTKEAEDSELDTQCLRNVFRHSKRLSFSLHPVPVKVCAVKDAASETS
KVPCADQVENKQSKYIKPQNLKGEKTAAERLSRVYEEEKDVSQVANQGNLTPIRMGTAGT
EDKNRLQGEQGKEKTLSTDTGIESKLRRNPVKRNRRQSVPADTRTDINTDDEICFNSENS
QAGKAKVVDDKGPIEPFQSGSMICPSPCQQRAAGFSCEVTGEKSSKRESEPVKGHEEGAS
QAASTGVSKCSGIEAPEESCKGNSDLTGLSETPDGLLCSDDDSGENISFSATHRRERSAV
FAKRGDNALEQELHNRNGISKPGSQHIQRPRRKARKLQSSDEESSEDEDLPCFQALIFGK
SVSTPLQSSKQAASVVEASVSPITLSHTRSHEDYNMQKMPEAALSNEYVSPSQDSECSVN
LFSSQSSTFEEPVGGAQELKLPLIQAHTSKQVSNVKESKEIFHSCSGGLKRSKTSSKDEC
QEDQNMAANLGEASAYDSETSNVEDSCEPFSQGEILTTQEKNIMQNNLKKLQQEMAVLEA
VLKQHGSQDCEFLPIPGELPHSSSEGTPGMEQMRQGGSESTSEVNFEDHRCSNPKGFSAN
DFSVLPSDSVNSKIKELGKERSPELLLPSSKRRVLKRPDLEPVLQCGSALQSKAASEQTK
PVQEAVQEHSQHQLAAENRDEQKCGTRLNSASVLSNLSGNVTRSPNNSSSSVRLLNPRTA
EATNSPVVTQKANKSRAQESKSKRNVCFPLSVLHNTAGKENLTSPVVTNRKAMSIVASGL
SQSEYLVVQKFVRKTQSTLSNHVTEGTTHVIMKTDKELVCERTLKYFLGIAGRKWVVSYQ
WVIQSFEEGRVLNEENFEVRGDVINGRNHQGPKRARQSLTEKIFKDFEICCYGPFTDMTT
EHLEWMVELCGASVVKQLHLFTHPTNSTAVVVVQPDAWMENTDYRAIQQKNNVAMVTREW
VLDSVACYERQEFDAYLVS
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggacttctcagtgattgctgttggagatgtgcaaaatgtgctttcagctatgcagaag
aacttggagtgcccaatatgcttggaaatgataaaagagccagtctccacaaagtgcgat
cacatattctgcaggttctgcatgttcaaactcctcagcagaaagaagaaaggtgtgaca
gagtgtccactgtgtaagactgaagttaccaaaagaagcctgaaagaaaattccagattt
aagcaactaattgaaggattgttggaaactatccatgcgtttgagcttgacactggagta
gagtttttaaacagtcgtcactttcctaaaccgtctacagaagccactggtgctgagttc
ctgtgcaaagagggttctgtcatccaaagtaagggcttcaggaacaggaaaagtgctaaa
gaaaatggacaagaaaactgcactttgcaggaagctaacgtggatacacagctgacagat
agtagggtcaaaaggcggtccccaagaaacaaaccccagaaatgtggctctcaaaaaggg
atttacatagagtttggctctgattcgtctgaagaggtttttaaacagtcaagcgttact
gggttagaagacaaagcagcacttcagatttcagctcaagagaagttagaagaactgagt
gctgagatggggaatgaatattcttgcaatgcacagcatgacaagctgggtgctgaagaa
gtaattctaccgaatgtcataggtgaaggtgattcctcaaaggaagtcttgagcaagaaa
agcactcggaacatcactgaatgtgcccaacctagacgagtgaatatgactgaataccag
agttctcctttcagtgttcttgctggagacctcctcacagagcagtgtgacaccataggt
aatgccagtcccttaaggagtggggacgcatctttctttaagagcacagaagaaatggat
gcagagcaaactcagtgcacgaggaaaagcgaagagtttgacttaaaagatagctcagag
agcaggttggataaaagcaaggaaatagatgttgcacaaagcgcggaagctgtggaaatg
ggtgaacctgagcatgattcttcccacgaaaaagaacttcctctggagaaacttcagcca
gagccacttcactgtgccctgaatccagtctctaggaagaggctgaagagaagcattcag
aaagtcaatgaatggttttcaaaaagcaatgagattctctcttccagttcttcccaggat
gattctgctggagcagctgacctttcacgggaaggagatgcatgtttatcagataaagat
tcctgtatttcagagaagactgaccctatggtggattctgtagaaattgcagtgcttgaa
agaaatgagagatggtcaaaacaaacagcagatagcatcaaagacaaaatctttgggaaa
acgtataagagagagaggaaatcaaatccccctgttatcttcagagacattttacctcct
gcgaaaaaggaagatgtggctgctgataagtgcttggatcgttccagcaaagacagtcta
aaacgaaaaaggaggattccccgtgtcctgcaacctgaggatttcatcaggaaaaaagat
acagaagaagcagatgggtaccctcatactggagatgctgaaaagaaaagatgtgatgaa
agttctgctgttagtgcgagtcgcctctctgcaaatcgagaggataatacactggcagaa
cttgaggaacggggaggatccatatggaaaaaagctactgaaaaggtgcctgggaagcac
tgtgctggggagctggaactgagtggctgtgatcagaaaagcactaagaaaagttctgca
gcaaaaagatgcaggcgttccactagatccatgtgtgccctgcagttagtagcagataga
agctctggttctgctgacccagctgagccacagatcgatagctacccaagcagtgaagaa
cccaggaaagctgattctgagcaaagacaagtcaggcgcagcaggaggcttcagttgctt
tctgaagaaatgacaaaagaaacaggaaaaggagttgaaatgaagggagcaagaaagtat
gtcagtgatcatgaaagggctggctttggagtccaaacgaatgcgttagttcacacttct
gaatgcaaagacctgggtgagccctggggtatgtcgagttccaaaccacttgctaatctg
aagggtggtgatctggaagcaaatgaaatacagattagtctaaagaattcatctgataat
gcagaaattgacaggactctctttagtcatacatcttcatgtcagcattcaatttgtagt
tcctttgtgcctgatacaggttctcaagaaggtgaaatccaaggtagccctctcctccta
cagtttcctccaacagctgttgtgcaaactgcttcccacccgactgaagagatgactgaa
tcatgtactgcttttccccaggatagtggacacgatacaccaagtgttccaggggacttg
agaactgagaagttgccagtggctgaaagtgttttggaattgaccaaggaagctgaagat
agcgagttagacacacagtgtctgcgaaatgtattcaggcattcaaaacgcctgtcattc
agccttcatcccgttcccgtgaaggtgtgtgcagtaaaagatgctgcttctgaaacttca
aaggtaccatgtgctgatcaggtagaaaataagcagagcaagtatataaaaccacaaaac
ctaaaaggagagaaaacagctgctgaaagattgagtagggtttatgaggaagagaaagat
gtttcacaggttgcaaatcaagggaatctgacacccataaggatgggcactgctgggact
gaagacaaaaacagattgcaaggagagcaagggaaggaaaagacattgtcaactgacaca
ggaatagaaagcaagttgagacggaatccagttaaaagaaatagaaggcaaagtgttccg
gctgatacaagaactgatataaacacagacgatgaaatatgcttcaattcagagaacagt
caagcaggaaaggccaaagttgttgatgacaaaggaccaatagaaccttttcagtctggc
tcaatgatctgtccttcaccttgtcagcaaagggctgctggattcagctgtgaagtcact
ggggaaaaaagtagcaaaagagaaagcgaaccagtgaaggggcatgaagaaggagcaagc
caagctgccagcacaggggtgtccaagtgttcaggtatagaagctccagaagaatcttgt
aaagggaatagtgatcttacaggtttgtctgagacccctgatggcttactgtgctctgat
gatgatagtggagagaacatcagcttttctgcaactcataggagagagagatctgctgtg
tttgcaaaaagaggtgacaatgctctggagcaagaactacacaatagaaatggtatttct
aagccaggatctcaacatattcaaagacctcgaagaaaagcacggaaactgcaatcttca
gatgaagaatctagtgaggatgaagatttaccatgttttcaggcattaatatttggcaaa
tcagtgagcacacctttgcagagcagtaaacaagcagcgtctgtggtagaggcttcagtg
agtcccatcacgttgtctcacactaggagccatgaggactataacatgcagaaaatgcct
gaagctgccctaagcaatgagtatgtttccccaagccaggactctgaatgctctgtcaac
ttattttcttcccagtccagcacgtttgaagaaccagttggaggagcacaagagctcaag
ttgcctttaatacaagctcatacatctaaacaagtgagcaatgtgaaagagagtaaagaa
attttccacagttgtagtggagggctgaagagaagcaaaactagctccaaagatgagtgc
caagaagaccaaaacatggcagcaaacctaggtgaagcatctgcatatgacagtgaaaca
agtaatgtagaggattcatgtgaaccattctctcagggtgaaatccttactacacaggag
aagaatattatgcaaaataacctaaagaaacttcagcaagaaatggctgtacttgaggca
gtgctgaagcagcatggaagtcaggactgtgaatttttacctatccctggggaactgcca
cattccagtagcgaaggaacacctggaatggaacaaatgagacaaggagggtcagagtca
acctcggaagtcaattttgaagatcacagatgcagcaatccaaagggattttcagccaat
gatttctctgtcttgccaagtgattctgtcaacagtaaaatcaaagagctagggaaagaa
aggtctccagaattgttgcttccatcttctaaacgccgtgtgttaaagaggccagatttg
gagccagttcttcagtgtggcagtgctctacagagcaaagctgcttcggagcagacaaaa
cctgtgcaggaagcggtgcaggagcatagtcagcatcagcttgcagcagaaaacagagat
gagcagaaatgtgggaccaggttaaacagtgcatctgtcttatcaaatctctctggaaat
gtgaccaggagtccaaataactcttcctcctctgtaagactacttaaccctcgaactgca
gaagcaacaaatagtcctgtagtgactcagaaagctaataaaagccgtgcccaagaaagc
aagtcaaagagaaacgtgtgttttcctctatctgttctgcacaatacagctgggaaagaa
aatcttacaagtccagttgtgactaacaggaaagcaatgtcaattgtggcatcaggcctg
agtcaaagtgaatatttggtggtccagaagtttgtgagaaaaactcagagcactttatct
aatcacgttactgaaggaaccacccacgtcataatgaaaacagataaggagctggtgtgt
gaacggacactgaagtacttcctgggtattgcaggaagaaaatgggttgttagttatcag
tgggtaattcagtcttttgaagaaggaagggtattgaatgaggagaactttgaagttaga
ggagatgtaatcaatgggagaaaccaccaaggtcctaagagggctaggcagtctctgact
gaaaagatctttaaagactttgagatctgctgctatggccctttcactgatatgactaca
gaacacctagaatggatggtggagctttgtggtgcctctgtggtgaagcagcttcatctg
ttcacacaccccacaaattccactgctgtcgtggttgtgcagccagatgcttggatggaa
aacacagattatagagcaatccagcaaaagaacaatgttgccatggtgactcgcgagtgg
gtactagacagtgttgcttgctatgagcgccaggagtttgatgcttaccttgtgtcctaa
DBGET
integrated database retrieval system
