Strigops habroptila (Kakapo): 115617875
Help
Entry
115617875 CDS
T08851
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115617875 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shab03041
]
115617875 (EFTUD2)
Spliceosome [BR:
shab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
115617875 (EFTUD2)
Complex C
U5 SnRNP specific factors
115617875 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
115617875
NCBI-ProteinID:
XP_030364727
UniProt:
A0A672UJH2
LinkDB
All DBs
Position
19:complement(299792..322819)
Genome browser
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGDHDEDHPGMDVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagttcgggaactacatcgggccggagctggactcggac
gatgacgacgatgagttgggcagagagtctaaagacctggatgagctcgaggatgatgac
gatgatgatgatatgggggaccatgacgaggaccaccctgggatggatgtggtgctgcat
gaggataagaagtactaccccaccgctgaagaggtctatgggcccgaagtagagaccatt
gtacaagaggaggacacgcagcctctcactgagcctattattaaacctgtgaaaaccaaa
aagttctctctgatggaacagacgttaccggtcactgtctatgagatggatttcctggca
gatctgatggacaactcggagctaattcgaaacgtgactctgtgtgggcatcttcaccat
ggcaagacttgttttgttgactgcctgatagaacagacacaccccgaaatccggaagcgc
tacgaccaggatctttgctacactgatatattgttcacagagcaagagagaggagtaggg
atcaagagcacaccagtgacgattgttctgccagacaccaaaggaaagtcttttctcttc
aacatcattgacactccaggtcatgtcaatttctctgatgaggtgaccgctggccttcgt
atttcggatggcgtcgtgcttttcattgatgcggctgagggggtgatgctgaacacagag
aggctgatcaagcatgcggtgcaggaaaggctggcggtgactgtgtgcatcaacaagata
gaccgactgatcctggagctgaaattgccccctacagatgcttattacaaactcagacat
attgtagatgaggttaatggtctgatcagcatgtattccacggatgagaacctcgttctg
tctccccttctggggaacgtgtgtttctccagttcacagtacagcatctgcttcacgctg
ggatcttttgcaaagatttatgcagacacatatggagatatcaactatcaggagtttgca
aagcggctttggggtgacatctacttcaacccgaagacccgcaagttcacgaaaaaggcc
ccgacgagcagctcccagcgcagttttgtggagttcattctggagcccctctacaagatc
ttggctcaggtggtgggggacgtggacacgaccctgcccaggactctggatgaacttggc
atccacctaaccaaagaggaattgaaattgaacattcggcccctcctgcggctcgtctgc
aagaagttctttggggaattcacaggcttcgtggacatgtgtgtgcagcacatcccctcc
ccaaaggtgggagccaagaccaaaattgagcacacctacaccggtggcgtcgactcagat
ctaggggaggccatgagtgaatgcgaccctgacggtccactgatgtgtcacacaacgaaa
atgtacagcacagatgatggcgttcagttccatgcctttggcagagtgctcagtggtacc
atccatgcggggcagcctgtgaaggtccttggggaaaactataccctggaagatgaggag
gattcccagatctgcaccgtcggacgcctctggatctcagtggcaaggtatcacattgag
gtaaaccgggttcctgctggcaactgggtgctgatagaaggagtggatcagcccatagtg
aagactgcaactgtcacagagcctcggggcaatgaggaggctcagatcttccgccctttg
aagttcaacaccacatctgttatcaaaatagctgtagagccagtcaacccctcagagctc
cccaaaatgttagatggcctccgcaaagtcaacaagagctacccctcgcttactactaag
gtggaagagtctggggagcacgtgatcctggggacaggggagctctacctggattgtgtg
atgcacgatctacggaagatgtattcagagattgatatcaaggtcgctgatccagttgtg
acattctgtgagacagtggtggaaacatcctccctcaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcctctggagaagggactcgcagaggacatt
gaaaatgaagtggtccagataacatggaacagaaagaaactgggtgaattcttccagacc
aaatatgactgggatctgctggctgcccgttccatctgggcctttgggccagatgcaact
ggcccaaacatcctagtagatgatacgctgccctcagaggtggataagtcgctgctgggc
tctgtgaaggacagcattgtgcagggatttcaatgggggacgagggaagggcccctctgt
gatgaattgatccgcaacgtgaagttcaagatcctggatgcagtgattgctcaggagccg
ctgcacaggggaggaggccagatcatccccacggcccgcagagtggtgtattctgcgttc
ctcatggctacccctcgtttgatggagccctactacttcgtggaggtgcaggctcctgct
gactgtgtgtctgcagtgtacacggtcctggcgcggcggagaggccacgtgacacaagat
gctcccatcccgggctctcctctctacaccatcaaagccttcatcccagccattgattca
tttgggttcgagacagacttgaggacccacactcagggacaagccttctcactctcggtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgtcatccgaccc
ctggagccccagccagccccacatctggccagagagttcatgatcaagaccaggcgtagg
aagggcttgagtgaggacgtgagcatcagcaagttcttcgacgaccccatgttgctggag
ctggccaagcaagacgttgttctcaactaccccatgtga
DBGET
integrated database retrieval system
