Strigops habroptila (Kakapo): 115619851
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Entry
115619851 CDS
T08851
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04622
RIG-I-like receptor signaling pathway
shab04623
Cytosolic DNA-sensing pathway
shab05164
Influenza A
shab05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115619851 (DDX58)
04623 Cytosolic DNA-sensing pathway
115619851 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
115619851 (DDX58)
05168 Herpes simplex virus 1 infection
115619851 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
shab04054
]
115619851 (DDX58)
Enzymes [BR:
shab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115619851 (DDX58)
Pattern recognition receptors [BR:
shab04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
115619851 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
AAA_19
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
115619851
NCBI-ProteinID:
XP_030368622
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All DBs
Position
Z:42075405..42097978
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AA seq
929 aa
AA seq
DB search
MTAEEKRNLQCYRRYIEKSLNPVYILSNMTAWLSDEEKERVRKEEEKGVTAAAALFLDTI
LLLEADGWLRGFLDALIAAGYTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEIDPVA
LMPYINTCLIERECDEILQISEYRSKAAGITKLIECLCRSDKENWPKRLQLALDNTGYYN
ASELWDMREDNGKDVDGEMTDACKNSFETTMTFSEEAECDNILSENLCSGSEEVYQSSSL
YEPKRARSYQTELAQPAINGYNTLICAPTGSGKTFVALMICEHHFQNMPSERKAKVVFLA
TKVPVYEQQKNVFKQHFERSGYSVQGICGETVANVSVEKVIQDSDIVVLTPQILVNSIEE
GILSSLSVFTLMIFDECHNTMGNHPYNVLMTRYLEQKFDSSSNQLPQIVGLTASVGVGNA
KTIKETIEYICTVCANLDIQAISTVRENKQDLQKFGNKPEIDVRWVKMRARNHFADIVSG
LMSETEALMRNNYSVDTISQINKSDFGTQKCEQWIVATQKKCRLLKLADKEKESSICRDL
FICTEHLRKFNDALIISEDARIEDALAYLTDFFRNVRNGPYTELEKQLTAKFQEKEPKLT
ALSKDESNENPKLEELACILDEAYHYNPQTRTILFAKTRALVAALKKWIEANPLFSHIQP
GILMGHGRRDQKTGMTLPMQKDVLDAFKTNKDTRLLIATSVADEGIDISECNLVVLYEYF
GNVTKMIQVRGRGRAKDSKCILVTNKTEMVEKEKHSRYKEEMMNEAVEKLQNWDERTFAR
KIHDVQMKEKVLRDSRKKETRYKVVEGKKNLLCGKCKAYACSTDDIRIIKESHHTVLGDA
FKERYITKPHHKPIQFDCFEKKSKMHCQNTNCQHDWGIIVKYRTFDNLPVIKIKSFVVEN
IETGTQMDFQKWKDLNFSLKNFDAEEMSS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgacggcggaggagaagaggaacctgcagtgctacaggcggtacatcgagaaaagcctg
aaccccgtctacatcctgagcaacatgacggcctggctgtcggacgaggagaaggagcga
gtccgtaaggaggaggagaagggggtgactgcggccgccgcgctcttcctggataccatc
ctgctgctggaggcggacggctggcttcggggcttcctggatgccctgattgcagcaggt
tacactgggctggcagaagcaattgaaaactgggacttcagcaaactggaaaaactggag
ttgcacagacagctgttgaagcggatagaagcaactatgctagaaattgatccagtagca
ctcatgccttacataaacacatgcctgatagaaagggagtgtgatgagatcctgcagatt
agtgaatacagaagcaaagcagccgggataactaaactcattgaatgtctctgtcgatcg
gataaggaaaactggccaaaaagacttcagctggcactggataatacaggatattacaat
gcaagtgaactgtgggatatgagagaagataatggcaaagatgttgatggtgaaatgaca
gatgcctgtaagaacagctttgaaaccacaatgacgttttctgaagaggcagaatgtgat
aatattctcagtgaaaacctctgttcaggttcagaagaggtctatcagtcttcatctctt
tatgaaccgaagagggctcggagctaccagactgaacttgcacagcctgctatcaatggg
tataacacattgatatgtgcccccacaggatctggaaaaacttttgtggcactgatgatt
tgtgaacaccatttccaaaacatgccctcagaacgaaaggcaaaagttgtctttcttgca
accaaagtgccagtgtatgaacaacagaaaaatgtattcaagcagcactttgaaagaagt
ggatattctgttcaaggaatttgtggtgaaacagttgcaaatgtctctgtagaaaaggtt
atacaggatagcgacatcgttgtgctaacaccccagattcttgtgaatagcatcgaagaa
gggatccttagctccctctccgtcttcactctgatgatatttgatgagtgtcacaacact
atgggcaaccacccttacaacgtgttaatgaccagatacctggaacaaaaatttgactcc
tcttcaaaccagctacctcagattgtaggtttaactgcttctgttggagtaggtaatgcc
aagaccatcaaggaaacaatagagtatatctgtaccgtctgcgccaaccttgacatacag
gccatatctactgtcagagagaacaaacaagatctgcagaaatttggaaacaagccagaa
atagatgtcagatgggtgaaaatgagagctcgaaatcactttgcagacattgtctcaggc
ctgatgtctgagacagaggcattgatgaggaacaattactccgtggatactatctcccag
atcaacaagagtgattttggaacacagaaatgtgaacagtggatagttgccactcagaag
aaatgcagactgttgaaactggcagataaggagaaggagagcagcatttgtagagacctt
ttcatttgcactgaacacctgcggaaattcaatgatgctctcatcatcagtgaagatgcc
cgcattgaagatgctttagcctacctaactgattttttcagaaatgtcagaaatggacca
tatacagagctagagaagcaacttacagccaaatttcaagagaaagaaccaaaactgact
gccctttcaaaagacgaatcaaatgagaatcccaagctggaagagcttgcctgcatcctg
gatgaagcataccactataacccacagactcgcactattctctttgctaagacaagagcc
ttagtagctgctttgaagaagtggatagaagcaaaccctctatttagccacatacagcca
ggtatattgatgggtcatggaagaagagatcaaaaaacaggtatgaccctcccgatgcag
aaggatgtactggatgcattcaaaaccaacaaagacaccagattgctaattgctacttct
gttgctgatgaaggcattgatatttctgagtgcaaccttgttgtgctctatgaatacttc
ggtaatgtcaccaaaatgatccaagtcagaggtcgtggaagggctaaagacagcaagtgc
atcctcgtgacaaacaaaacagaaatggttgagaaagagaaacacagccgttacaaggaa
gaaatgatgaatgaagctgttgaaaagctacagaattgggatgaaagaacatttgcaaga
aagatacatgatgtgcaaatgaaggaaaaggtattacgagattccaggaagaaagaaacg
cgatataaggtagtggaagggaaaaaaaatcttctgtgtggaaaatgcaaagcatatgcc
tgcagtacagatgacatcagaattataaaggaatctcatcacactgtcctaggagatgca
ttcaaggagcgatatataacaaagcctcaccataaaccaatccagtttgattgttttgag
aaaaaaagcaagatgcattgccaaaatactaactgccagcatgactggggaatcatagtg
aagtacaggacatttgataatctaccagtgatcaaaatcaaaagctttgtagtagagaac
attgaaactgggacacaaatggattttcagaaatggaaagatcttaatttttctctgaag
aattttgatgctgaagaaatgtccagctga
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