Streptomyces halobius: K9S39_14995
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Entry
K9S39_14995 CDS
T09588
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shau
Streptomyces halobius
Pathway
shau03030
DNA replication
shau03410
Base excision repair
shau03420
Nucleotide excision repair
shau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K9S39_14995 (ligA)
03410 Base excision repair
K9S39_14995 (ligA)
03420 Nucleotide excision repair
K9S39_14995 (ligA)
03430 Mismatch repair
K9S39_14995 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shau03032
]
K9S39_14995 (ligA)
03400 DNA repair and recombination proteins [BR:
shau03400
]
K9S39_14995 (ligA)
Enzymes [BR:
shau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K9S39_14995 (ligA)
DNA replication proteins [BR:
shau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K9S39_14995 (ligA)
DNA repair and recombination proteins [BR:
shau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K9S39_14995 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K9S39_14995 (ligA)
MMR (mismatch excision repair)
DNA ligase
K9S39_14995 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K9S39_14995 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UQA92969
LinkDB
All DBs
Position
complement(3273522..3275738)
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEQHAAVSKVPAAAREKHAQLAEQIEEHRFRYYVKDAPIVSDAEFDRLLRSLEALEAE
HPELRTPDSPTQKVAGAYATEFTEVEHRERMLSLDNAFVDDELTAWAERLAGELGGDPKS
AGYHFLCELKVDGLAVNLTYERGRLTRAATRGDGRTGEDITPNIRTIAEIPHRLKGDRIP
ELVEVRGEVYFPMEKFLELNERLVADGKPPFANPRNAAAGSLRQKDPKVTASRPLHMVVH
GTGAREGFAIDRQSQAYDMLREWGLPTAAHATVVDSLAAVREFIAHYGDPDTRRTAVEHE
IDGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYPPEEVNSKLVDIRVGVGRTGRVTPYAVV
EPVTVAGSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGGEREFV
MPAECPECGTALQPAKEGDVDLRCPNARGCPAQIRERLFYLAGRKCLDIENFGYVAATAL
SQPLEPEEPPVKDEGDLFGLSVEQLLPIKSYVLDPDTGLPKRDPKTGEEKVVTFFANQKG
EPKKNTLAMLENIQAAKERPLARIITGLSIRHVGPVAAEALAREFRSLDRIRDASEEELA
AVDGVGGTIAASLKQWFAEEWHQQIIERWRAAGVRMEEEQTGEEGPRPLEGVTVVVTGTL
QSHTRDGAKEALQGLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDEGFAVLL
EQGPDAARAVAVTPPEEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacagcacgcagcggtatccaaggtgcccgcagcggcgcgggagaagcac
gcgcagctcgctgagcagatcgaggaacatcgcttccggtattacgtgaaggacgccccg
atcgtcagcgacgcggagttcgaccggttgctgcgctccctggaggcgctggaggccgag
cacccggagctgcgcaccccggattcaccgacccagaaggtcgccggcgcgtacgccacg
gagttcaccgaggtcgagcaccgcgagcggatgctctccctcgacaacgccttcgtcgac
gacgagttgacggcctgggccgagcggctcgcgggggagctgggcggcgatccgaagagc
gccggctaccacttcctgtgcgagctgaaggtcgacggcctggccgtcaacctcacctat
gagcggggccggctgacccgcgccgccacccgcggcgacggccgcaccggcgaggacatc
acccccaacatccgcaccatcgccgagattccgcaccgcctgaagggcgaccggatcccc
gagctggtcgaggtccgcggcgaggtctacttcccgatggagaagttcctggagctcaac
gaacgcctggtggccgacggcaaaccgccgttcgccaacccgcggaacgccgccgccggt
tcgctgcgccagaaggaccccaaggtcaccgcgagccgcccgctgcacatggtggtgcac
ggcaccggcgcccgcgagggcttcgccatcgaccgccagtcgcaggcgtacgacatgctg
cgtgaatggggcctgccgacggccgcgcacgccaccgtcgtcgactccctcgcggcggtc
cgcgagttcatcgcccactacggcgaccccgacacccgccgtacggccgtcgagcacgag
atcgacggcgtggtcgtcaagctggacgagatcccgctccagggccggctgggctcgacc
tcgcgcgctccccggtgggcgatcgcctggaagtatccgccggaggaggtcaacagcaag
ctggtggacatccgcgtcggcgtcggccgtacgggacgggtcacgccgtatgccgtggtc
gagccggtgacggtcgccgggtccgaggtggagttcgccaccctgcacaaccaggacgtg
gtcaaggccaagggcgtgctcatcggcgacaccgtcgtgctgcgcaaggcgggcgatgtc
atcccggagatcctgggcccggtcgtcgacctgcgggacggcggtgagcgggagttcgtg
atgccggccgagtgccccgagtgcggtacggcactgcagcccgccaaggaaggcgatgtc
gacctgcgctgccccaacgcccgcggctgccccgcccagatccgtgagcggctgttctat
ctggccggccgcaaatgcctggacatcgagaacttcggctatgtcgcggcgacggcgctc
agccagccgctggagcccgaggagcccccggtgaaggacgagggcgaccttttcggcctt
tccgtagagcagctgctgcccatcaagtcgtatgtcctcgaccccgataccgggctgccc
aagcgtgacccgaagaccggcgaggagaaggtcgtcaccttcttcgccaaccagaagggc
gagccgaagaagaacaccctcgccatgctggagaacatccaggccgccaaggagcgcccg
ctggcccggatcatcaccgggctgtcgatccgccatgtgggcccggtggccgccgaggcg
ctggcccgggagttccgctcgctggaccgtatccgggacgcgagcgaggaggagctggcc
gccgtcgacggcgtcggcgggaccatcgccgcgtccctgaagcagtggttcgccgaggag
tggcaccagcaaatcatcgagcggtggcgggcggccggtgtccggatggaagaggaacaa
acgggcgaagagggaccacgtcccctggaaggcgtcaccgttgtggtgacgggcacactt
cagtcacacaccagagatggcgcgaaagaggccctccaaggactcggagcgaaggtgacc
ggttccgtttcgaagaagaccggtttcgtagtggtgggtgacaaccctggttcgaagtac
gacaaggccatgcaactgaaggtccctgtgctggacgatgagggcttcgcggtgctgctg
gaacagggtccggacgcggcccgagcggtggcggtcactccgcctgaggaggagtga
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