Sulfuritalea hydrogenivorans: SUTH_01741
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Entry
SUTH_01741 CDS
T03591
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shd
Sulfuritalea hydrogenivorans
Pathway
shd03030
DNA replication
shd03410
Base excision repair
shd03420
Nucleotide excision repair
shd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SUTH_01741
03410 Base excision repair
SUTH_01741
03420 Nucleotide excision repair
SUTH_01741
03430 Mismatch repair
SUTH_01741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shd03032
]
SUTH_01741
03400 DNA repair and recombination proteins [BR:
shd03400
]
SUTH_01741
Enzymes [BR:
shd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SUTH_01741
DNA replication proteins [BR:
shd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SUTH_01741
DNA repair and recombination proteins [BR:
shd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SUTH_01741
NER (nucleotide excision repair)
GGR (global genome repair) factors
SUTH_01741
MMR (mismatch excision repair)
DNA ligase
SUTH_01741
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SUTH_01741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BAO29533
UniProt:
W0SHX0
LinkDB
All DBs
Position
1762014..1764068
Genome browser
AA seq
684 aa
AA seq
DB search
MLLQEAAARTESLRREIERHNHAYYVLDAPTIPDAEYDKLFRELQALEAAHPQLASADSP
TRRVGGKPLPEFAPVRHAVPMLSIRTETDTEPTGARAFDARVRRELGLNDADAAVEYAAE
LKFDGLAISLRYENGVLVQAATRGDGETGEDVTQNIRTVRRIPLRLEGEGPPALEVRGEV
FMSRPDFERYNEKQRALGRATLVNPRNGAAGSIRQLDPAMTAERPLSFYAYGLGESRGWA
LPATHGGVLDALAAFGLPVCEHRAVVRGADGLIAFHARIREARDALPFDIDGVVYKVNSL
ALQQQLGFVTREPRWAVAHKYPAEEALTTVEAIEVQVGRTGAITPVARLAPVFVGGVTVT
NATLHNEGEARRKDVRIGDTVVVRRAGDVIPEVVSVVLERRPMKDLVEALHGPWELLKEY
PTCPVCHSTIEKPEDEAIARCTGGLFCPAQRKQALLHFASRRAMDIEGLGDKLVEQLVDN
AIVKTPADLYKLGLLAMVNLERMAEKSATNILAAIEKSKTTTLARFIFALGIRNVGEATA
KDLARHFGNLDALMAADIDRLQQVPDVGPVVAASIARFFAEPHNVEVIEQLRAAGVNWPE
GEPSAVANSPIAGKTFVLTGTLPTLTRDEAKDMIEALGGKVAGSVSKKTDYVVAGAEAGS
KLDKAQALGVSILDERQFRELVKT
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgcaagaagcagcggcgcggaccgaaagcctgcgtcgcgaaattgaacggcac
aaccatgcctattacgtgctcgatgcgccgaccattccggatgccgagtacgacaagctg
ttccgcgagttgcaggcgctggaggcggcgcatccccagctggccagcgccgattcgccg
acccggcgggtcggtggcaagccgctgcccgaattcgccccggtgcgccatgccgtgccg
atgttgtcgatccgcaccgaaaccgacaccgagccgacgggcgcgcgcgctttcgatgcc
cgcgtgcgccgcgagttgggcctgaatgatgccgatgctgccgtcgagtacgccgccgaa
ctgaagttcgacggcctcgccatcagcctgcgctatgaaaacggcgtgctggtgcaggcc
gcgacccgcggcgacggcgagaccggtgaggacgtcacgcagaacatccgcaccgtgcgc
cgcatcccattgcgccttgaaggcgaagggccgccggcgctggaggtgcgcggcgaggtg
ttcatgagtcgtcccgatttcgagcgctacaacgagaagcagcgggcgctgggacgagcg
acactggtcaacccgcgcaatggtgccgcgggcagcatccgccagctcgatccggcaatg
acggcggaacggccgttgtccttctatgcctacggcttgggcgaaagccgcggctgggcg
ctgccggcgacgcacggcggcgtactcgatgcgctggccgccttcggcctgccggtgtgc
gagcaccgcgcggtggtgcggggcgccgacggcctgatcgctttccatgcgcgcatccgc
gaggcgcgcgacgcgctgcccttcgacatcgacggcgtggtgtacaaggtcaattcgctg
gcgctgcagcagcagctcggcttcgtcacgcgcgaaccgcgctgggcggtggcgcacaag
tatccggcggaagaggcgctgaccacggtggaggcaatcgaggtacaggtcggccgcacc
ggcgcgatcacgcccgtggcccggctggcgccggtcttcgtcggcggcgtgacggtgacc
aatgccacgctgcacaacgaaggcgaggcgcggcgcaaggatgtgcgcatcggcgatacg
gtggtcgtgcggcgggccggtgacgtgattcccgaggtggtgtcggtggtccttgagcgg
cgacccatgaaggatcttgtggaggcgctgcacgggccatgggaactgctcaaggaatat
ccgacctgtccggtttgtcactccacgatcgaaaagcccgaagacgaggcgatcgcccgt
tgcaccggcggcctgttctgcccggcgcagcgcaagcaggccctgctgcatttcgccagt
cgccgcgcaatggacatcgagggcctgggcgacaaactggtcgagcaactggtagacaat
gccattgtcaagacgccggccgacctctacaagctgggcctgctggccatggtcaacctg
gagcgcatggccgaaaagtcggcaaccaacatccttgcggccatcgaaaagagcaagacg
acgacgctggcgcgcttcatcttcgcgctgggcatccgcaacgtaggcgaggcgacggcg
aaggacctggcgcgccacttcggcaatctggatgcgctgatggcggcggacatcgaccgc
ttgcagcaggtgcccgacgtcggtccggtggtggcggcctcgattgcacgcttctttgcc
gaaccgcacaacgtcgaggtgatcgagcagctgcgtgcggcaggcgtgaactggcccgag
ggcgagccgtcggcagtggcgaactcgccgatcgccggcaagaccttcgtcctcaccgga
acgctgccgacgctgacgcgcgacgaggcgaaggacatgatcgaggcgctgggcggcaag
gtcgccggctcggtgtcgaagaagaccgattacgtggtggccggcgcggaagccggctcc
aagctcgacaaggcgcaggccttgggcgttagcattctggatgagaggcaattcagggag
ttggtgaagacatga
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