Shewanella sp. MR-4: Shewmr4_1508
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Entry
Shewmr4_1508 CDS
T00388
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
she
Shewanella sp. MR-4
Pathway
she03030
DNA replication
she03410
Base excision repair
she03420
Nucleotide excision repair
she03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
she00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shewmr4_1508
03410 Base excision repair
Shewmr4_1508
03420 Nucleotide excision repair
Shewmr4_1508
03430 Mismatch repair
Shewmr4_1508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
she03032
]
Shewmr4_1508
03400 DNA repair and recombination proteins [BR:
she03400
]
Shewmr4_1508
Enzymes [BR:
she01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Shewmr4_1508
DNA replication proteins [BR:
she03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Shewmr4_1508
DNA repair and recombination proteins [BR:
she03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Shewmr4_1508
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shewmr4_1508
MMR (mismatch excision repair)
DNA ligase
Shewmr4_1508
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shewmr4_1508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABI38586
UniProt:
Q0HK31
LinkDB
All DBs
Position
1773763..1775835
Genome browser
AA seq
690 aa
AA seq
DB search
MNMQDIQLDKRLSELLSQAVTPHNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLM
QRLKQLEAEYPQFVAADSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVS
DRVGEVSFCCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGD
NYPELVEVRGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSF
YAYALGVVEPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRSYL
PFEIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPV
ARLKPVFVGGVTVSNATLHNADEIERLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAK
AIAFPQHCPVCGSLVERLEGEAVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVE
QLIDKELVQSPADLFKLPASMMTMLDRMGMKSATNLAQAIEAAKTTTLPRFLYALGIREV
GEATASNLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAG
VNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAG
EAAGSKLAKAQELGVKVIGEDELLALLANS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgcaagacattcaactcgataaacgcctatctgaactgctttctcaagctgtc
acgccacacaatgctcagccattgatgcaggcgctctgccaatctctgaatgaacacaat
attcgttactatgttgatgatgcgccaagcattaccgactccgaatacgacagattaatg
cagcgtctgaaacagcttgaggccgagtatcctcagtttgttgctgccgactcacccacc
caaagagtgggcggcatggcgctggcaaagtttgaacaaatcactcatcttaagcctatg
ttaagtctcgataatgccttcgatgaggcagactttagcgcgtttcataaacgtgtcagc
gacagagttggcgaagtgagtttttgttgtgagcctaagctcgatggtctagctgtgagt
attttgtatcgcaatggtgtgcttgagcgcgccgcgacccggggtgatggtaccgtgggt
gaggatattactgaaaacgttaaaaccattaagtcgattccgctcaaactgcgcggtgac
aactatcccgaattggtcgaagtgcgcggcgaagcctttatgcccaaggcggcgtttgag
gcactaaatgagcgtgcacgcttaaaggatgaaaagctgttcgtcaatccgcgtaatgcg
gcggcgggcagcttacgtcagctcgacagtaaaattaccgcgtcacgggcgctgtctttt
tatgcctacgccttaggtgtggtggagccgacttcccatgagctagctaagacgcattat
gagcaattgcagcaacttaaatcttgggggctaccagtcagtagcgagatcaaagtctgt
gacgaactcagccaagtatttgcctactatcaagatatattgactcgccgcagctattta
ccctttgagatcgatggcgtggtgatgaaggtgaacgatatcgcccagcagcaaacctta
gggtttgtggctaaatcaccccgttgggcgattgcctataagttccccgctcaggaagaa
atgaccctgctcgaaggcgtagattttcaagtgggccgcactggcgcggtgactccagtc
gcgcgcctaaaacctgtgtttgtcggcggcgtgaccgtatcgaacgcgactttgcacaat
gccgatgaaatcgagcgtttaggtgtgatggtgggcgatactgtgattatccgccgtgcc
ggcgatgtgatcccgcaaattgtggccatagtgcctgagcgtcgcccagaagatgcgaag
gcgattgccttcccgcaacattgccccgtttgcggtagtttggttgagcgattagaaggt
gaggccgtgacccgttgtagcggcggcttattctgtgaggcccagcgtaaagaggcgatc
aagcattttgcctcccgcaaggcattagatatcgacggcatgggcgataaaattgtcgag
cagttgattgataaggagctggtgcaaagcccggctgacttatttaaactccccgcctct
atgatgaccatgctcgaccgtatgggaatgaagtcggccaccaatctcgcgcaggcgatt
gaagcggctaaaaccacgactttgcctcgtttcctctatgccttaggcattcgtgaggtg
ggggaggccacggcgtcgaaccttgcgactcactttggtagcctagaggcactgcgcgtg
gccaccattgagcaacttattcaagttgaagatattggtgaagtggttgcccagcacgtg
gcgcatttctttgcccagccccataacctagaggtgatcgatgctttgattgcggcgggc
gtcaactggcctacgattgcagcgccaagcgccgatgagcagccgttgaaggggcagact
tgggtgttaacagggaccttaaatcaactcaaccgtaacgatgctaaggcgcagttacag
gccttaggcgccaaagtagcgggcagtgtgtcgaaaaataccgattgcttagtcgcgggc
gaagcggcggggtctaagcttgccaaagcgcaggagcttggcgtgaaagtgattggcgag
gatgaattgttggccttactggcaaatagctaa
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