Shewanella sp. H8: ABIS04_10400
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Entry
ABIS04_10400 CDS
T10623
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
sheh Shewanella sp. H8
Pathway
sheh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sheh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABIS04_10400 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sheh03400
]
ABIS04_10400 (nth)
Enzymes [BR:
sheh01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
ABIS04_10400 (nth)
DNA repair and recombination proteins [BR:
sheh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABIS04_10400 (nth)
Prokaryotic type
ABIS04_10400 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
ORC6_2nd
HHH_8
Motif
Other DBs
NCBI-ProteinID:
XBJ46922
LinkDB
All DBs
Position
2400263..2400904
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AA seq
213 aa
AA seq
DB search
MNKDKRIQILKRLRDNNPKPETELNFSSPFELLVAVTLSAQATDVSVNKATAKLFPVANT
PQAIFDLGVDGLKQYIKTIGLYNNKAVNVINACKMLIDLHAGEVPENREALEALPGVGRK
TANVVLNTAFGWPTIAIDTHIFRVANRTKFAPGKNVDQVEQKMLKVVPSEFKVDVHHWFI
LQGRYTCLARKPRCGSCIIEDLCEFKDKVYPED
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagataaacgaattcaaatccttaaaagattaagagacaataatccaaagcct
gaaaccgaattgaacttttcaagtccgtttgagttactcgtagctgtcacgttatcagca
caagcgactgatgtcagtgtcaataaggcgaccgccaaactatttccagtcgctaataca
cctcaagccatattcgacttaggggttgacggtctgaaacaatacataaaaaccattggt
ttatacaataacaaagccgttaatgtcattaacgcttgtaaaatgttgattgatttacat
gcaggtgaagtaccagaaaatcgtgaagcattagaggctttaccaggcgtaggtcgcaaa
acagcaaacgtagtactcaacacagcatttggctggcctaccattgcaattgatactcat
atatttagagttgctaatcggactaagtttgccccaggaaagaatgtcgatcaagtcgag
cagaagatgttaaaagtggtgccgagtgaatttaaagtagatgtacatcactggtttatt
ttacaaggacgatatacttgtttagccagaaagccacgatgtggtagctgtataattgaa
gatttatgtgaatttaaagataaagtatacccagaagattaa
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