Shewanella sp. LZH-2: JM642_10935
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Entry
JM642_10935 CDS
T10525
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
shel Shewanella sp. LZH-2
Pathway
shel03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JM642_10935 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shel03400
]
JM642_10935 (nth)
Enzymes [BR:
shel01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JM642_10935 (nth)
DNA repair and recombination proteins [BR:
shel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JM642_10935 (nth)
Prokaryotic type
JM642_10935 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
Aldose_epim
HHH_8
HHH_5
Motif
Other DBs
NCBI-ProteinID:
QRK77848
LinkDB
All DBs
Position
2452190..2452831
Genome browser
AA seq
213 aa
AA seq
DB search
MNQQKRIQILTRLRENNPKPETELNFSSPFELLVAVTLSAQATDVSVNKATDKLFPVANT
AHSIYALGVEGLKEYIKTIGLYNNKAINVIKTCEILIEKYNGEVPEDREALESLPGVGRK
TANVVLNTAFGWPTIAVDTHIFRLANRTKFAPGKNVVEVEERMLKVVPAEFKVDVHHWFI
LHGRYTCLARKPRCGSCIIEDLCEFKEKAYPEE
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaacaaaaacgcatccaaatcctcacccgcctacgtgaaaacaatcccaaaccc
gaaactgagctgaatttctccagtccctttgaattactggtggcggtgaccttgtcggca
caagcaactgatgtgagcgtgaataaggcgaccgataaactgtttccggtggccaatacc
gcccacagcatttatgccttaggcgtggaaggattaaaggaatatatcaagacgattggc
ctgtataacaacaaggctatcaatgtgattaaaacctgtgagatcttgattgaaaaatac
aatggcgaagtcccagaggacagagaggcgctagagtcgcttcctggtgtcggccgtaaa
accgccaatgtggtgttaaacaccgcctttggctggccaaccatcgccgtcgacacccat
atctttcgcctcgcaaaccgcactaaattcgccccaggtaaaaacgtggtcgaagtcgag
gagcgtatgttaaaggttgttcccgctgaatttaaggtcgatgtgcaccactggtttatt
ctgcatggtcgctatacctgtctggctcgcaaaccgcgctgtggcagctgtataattgag
gatctttgcgagtttaaagaaaaggcctaccccgaagaataa
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