Shewanella sp. LZH-2: JM642_12045
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Entry
JM642_12045 CDS
T10525
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
shel Shewanella sp. LZH-2
Pathway
shel01501
beta-Lactam resistance
shel01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JM642_12045
01503 Cationic antimicrobial peptide (CAMP) resistance
JM642_12045
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shel02000
]
JM642_12045
01504 Antimicrobial resistance genes [BR:
shel01504
]
JM642_12045
Transporters [BR:
shel02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JM642_12045
Antimicrobial resistance genes [BR:
shel01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JM642_12045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
DUF6286
Motif
Other DBs
NCBI-ProteinID:
QRK78049
LinkDB
All DBs
Position
2715776..2719039
Genome browser
AA seq
1087 aa
AA seq
DB search
MSIISTSVKRPVTVWMFMLAIMLFGMVGFSRLAVKLLPDLSYPTLTIRTMYDGAAPVEVE
QLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDTIALPLD
VKKPLLLRFNPNLDPIMRLALSVPNATETELKQMRTYAEEELKRRLEALSGVAAVRLSGG
LEQEVHIQLNQEKLSQLNLNADDIKRRINEENINLSAGKVIQGDREYLVRTLNQFNSLEE
LGQVIVYRDAQTLVRLFEVATITDAFKERSDITRIGSQESIELAIYKEGDANTVAVAKKL
RDELLKINKDPQQNKLEVIYDQSEFIESAVSEVTSSALIGSILSMLVIYLFLRNIIPTLI
ISISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENIDRCRSEGMSKL
DAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFSDQALTVTFALLASLLVALTS
IPMLASREGFKALPELMNKTPKEKPTTKLGKLKHYSATVFSFPIVLLFSYLPSALLTLVL
IIGRFFSWLFGLVMRPLSNGFNVVYHSIESIYHKLLALALRKQIMTLLLTIGITGACISL
LPRLGMELIPPMNQGEFYVEILLPPGTAVGETDRVLQQLAMSIKDRPEVKHAYSQAGSGG
LMTSDTARGGENWGRLQVVLGDHNAYHQVTQVLRDTARRIPELEAKIEQPELFSFKTPLE
IELTGYDLTLLKRSADNLVKALSASDRFADVNTSLRDGQPELSIRFDHARLAALGMDAPT
VANRIAQRVGGTVASQYTVRDRKIDILVRSQLDERDQISDIDTLIINPDSSQPIALSAVA
EVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAQAQQILSTQVLPASVQARFGGQNE
EMEHSFQSLKIALILAVFLVYLVMASQFESLLHPLLILFAVPMALAGSVLGLYITQTHLS
VVVFIGLIMLAGIVVNNAIVLVDRINQLRAEGVQKLEAIKVAAKSRLRPIMMTTLTTVLG
LLPMALGLGDGSEVRAPMAITVIFGLSLSTLLTLIVIPVLYALFDRKEFTHTATEQDNTA
ETAEARL
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcattagcacctcagttaaacggccagtcacggtatggatgttcatgctggcc
attatgttatttggtatggtcggattttcgcgcttagcggtaaaactcctgcccgattta
agctaccccaccttaaccattcgaaccatgtacgacggtgctgcgcccgttgaagtggag
caactggtctcaaaacccattgaagaagccgtcggtgtggtgaaaggcttacgtaagatc
agctctatttctcgctcaggcatgtccgatgtggtacttgagtttgaatggggcaccact
atggatatggcaagtctcgatgtgcgtgaaaaactcgacactatcgccctgccgctcgat
gttaaaaagccattactacttcgctttaaccccaaccttgatcctatcatgcgcctagcg
ctgtctgtaccaaatgccactgagacagagctcaaacagatgcgtacctacgcagaagaa
gagcttaagcgccgcctagaggctctttctggggttgccgctgtgcgtttatccggcggt
ttagaacaggaagtgcatattcaactcaatcaggaaaaattatcccaactcaatttgaat
gccgatgacattaagcgtcgcatcaacgaggaaaacatcaacttatctgcgggcaaagtg
atccaaggcgaccgcgaatatctggtacgaacccttaaccaattcaattcattggaagaa
ctagggcaagtgatcgtctatcgcgacgcacaaaccttagtacgtctatttgaagtcgct
acgattaccgatgcctttaaagagcgcagcgatatcacccgtatcggtagccaagaatcg
atagaactggctatttataaggaaggtgatgcaaacacggtcgccgttgccaaaaaattg
cgcgatgagctattgaagatcaacaaagatcctcagcagaacaaactggaagtgatttac
gatcaatccgagtttatcgaaagtgctgtcagtgaagtgacctcttcagcgttaataggc
agtattttgtccatgctggtgatttatctgttcctgcgcaatattatcccgacgctgatt
atctctatctcaatccccttctcggtgatcgctacctttaacatgatgtactttgccgat
atcagcttaaacatcatgtcattaggtggtattgcgctggcgattggtctgttggttgac
aacgcgattgtggtactcgaaaacatcgaccgctgtcgcagtgaaggcatgagtaaattg
gatgctgcggtaacgggcacaaaggaggttgctggcgcgattttcgcctcgacaatgacg
acgctcgcggtgtttgttcccttagtttttgtcgatggtattgctggcgccctcttttca
gatcaagccttaacggtgacctttgcgctcttggcctccttgcttgttgccttaacctcg
attcctatgctggcctcacgggaaggatttaaagctttgccggagctcatgaataaaacg
ccgaaggaaaaaccgaccactaaacttggcaaattaaaacactatagtgcgacggtgttc
tccttcccgattgtgttgctatttagttacttgccgagtgccttactcaccttagtgttg
attattggccgcttcttttcgtggttgtttggcttagtgatgcgcccgctgagcaatggc
tttaatgttgtgtaccacagtatcgagtctatttaccataagctactggctttggcgctg
cgtaagcaaatcatgacgttactactgacgattgggatcactggtgcctgtattagcttg
cttccccgtttaggaatggaattaattccaccgatgaaccaaggggaattctatgttgaa
atactgctaccacctggcacagctgtgggtgaaaccgatagggtcttgcaacaactggcg
atgtcgattaaagacagaccagaagtgaaacatgcctacagccaagcgggtagcggaggg
ttaatgacctcagacaccgctcgtggcggcgaaaactggggcagattacaggtcgtactt
ggagatcacaacgcctatcatcaggtgacgcaagtgctacgagacacggcgcgccgcatc
cccgagcttgaggcaaaaatcgagcaacctgaactctttagctttaagacgccattggag
attgagctaacaggctacgatttaaccttactaaaacgcagtgccgataaccttgttaag
gcgttgtcagcatctgatcgctttgccgatgtaaatactagcctgcgtgatggtcagcca
gaattgagcatccgtttcgatcatgctcgtttagccgcattaggaatggatgccccgacg
gttgccaatcgcattgcccaacgtgttggtggcactgtcgccagtcaatatacggttcgt
gatcgcaagattgatattctcgttcggagtcaactggatgagcgggatcaaattagcgac
atcgataccttaattatcaaccctgacagctcccaacccatagcccttagtgcagtagca
gaagtatcactgcaattaggcccatcggcgattaaccgtatcagtcaacaaagggtggcc
ttggtatcggcaaaccttgcctacggcgacttaagtgatgccgtagcccaggcgcagcag
atcctgtctacgcaggtattgccagcatcggtgcaagcccgtttcggtggccagaatgag
gaaatggagcattcattccaatcactaaaaattgcattgatcctagcggtgttcttggta
tacctcgtgatggcaagccaatttgagtcactgctgcatccattgctcattttattcgct
gtgccaatggcactggcaggaagtgtgcttggcctttatatcactcaaacccatctaagc
gtggtggtctttattggccttatcatgctggcggggatcgtcgtcaataatgccattgta
ttagtggatagaataaatcaactacgtgctgagggcgtgcagaagcttgaagccattaaa
gtcgcagcgaaatcccgtcttcgcccgattatgatgacaacgcttaccactgtactaggt
ctgctccctatggcattagggctaggcgatggctcagaagttcgcgcaccaatggcgatt
accgtgatatttggcttgagcttatcgacgttattaaccttgattgtgatcccagtgctc
tatgccctgtttgaccgtaaagagtttacgcataccgccactgagcaagacaacacggca
gaaactgcggaggctcgcctatga
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