Shewanella sp. LZH-2: JM642_20270
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Entry
JM642_20270 CDS
T10525
Name
(GenBank) multidrug efflux RND transporter permease subunit
KO
K18146
multidrug efflux pump
Organism
shel Shewanella sp. LZH-2
Pathway
shel01501
beta-Lactam resistance
Module
shel_M00649
Multidrug resistance, efflux pump AdeABC
Brite
KEGG Orthology (KO) [BR:
shel00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JM642_20270
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shel02000
]
JM642_20270
01504 Antimicrobial resistance genes [BR:
shel01504
]
JM642_20270
Transporters [BR:
shel02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JM642_20270
Antimicrobial resistance genes [BR:
shel01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AdeABC [MD:
M00649
]
JM642_20270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Patched
Motif
Other DBs
NCBI-ProteinID:
QRK79562
LinkDB
All DBs
Position
complement(4623814..4626945)
Genome browser
AA seq
1043 aa
AA seq
DB search
MPQFFINRPVFAWVIALFIVLIGVISIPQLPISRYPSVAPVSVSIYAAYPGATPQTLNDS
VISLVERELSGVKNLLYFESSVDSSGSAQITATFKPGTDAELAQVDVQNRIKAVEPRLPQ
VVRQSGLQVESAASSFLMMIGMTSPNGQFDEVALNDYLARNVVEELRRIDGVGRVQLFGA
EQAMRVWVDPNKLTAYGLTMNDLALAIEQQNAQIAPGRLGDEPALPGQRLTVPLTVQGQL
TTPEEFAAIALRSSVDGAKLVLADVARVELGAQSYGFSNRENGVTATSAAIQLSPGANAV
RTASAVRERLAELATSMPSGISYSVPFDTAPFVKVSIKKVIYTLFEAMGLVFLVMFLFLQ
KLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENVERLM
ATQGLSPKEATSRAMKEITGAVIGITLVLTAVFIPMAFGTGSVGVIYQQFSLAMAVSILI
SAFLALSLTPALCSTLLHPVSADHQHKSGFFGAFNRAFERLTTRYSARLVHLVGRSGRMM
AAFAVICAVLVLAVKELPSSFLPDEDQGYFMTSIQLPTGATSERTLEVVKKYEAHVATRP
TLDTNMVVQGFSFAGSGPNAAMAFTMLKDWDKRNGATAAEEAELAQQAMADNVEGTVMSL
MPPAIDELGTSSGFTLYLQDRANRGETALLAAQAQLLELAAQSKVVSNVYPDGLPPGESI
NLNINRPKAEAMGLSFAAVSSTLSAAMGSQYVNDFPNNGRMQQVILQAEASARMQLDDVL
SLRVRNTSGGMVPLREVVTPKWSESPQQMMRFQGFPAVRISGGAAPGVSSGASMAEMERL
VAQLPLGYAIAWTGASLQERQSAAQAPLLMLLSALVVFLVLAALYESWSIPLSVMLVVPL
GLIGAVAAVMLRGMPNDVFFKVGMITIIGLSAKNAILIVEFARQLHAEGRSLVDAAVTAA
RLRLRPILMTSLAFTLGVVPLMLASGASAETQHAIGTGVFGGMLSGTILAIFFVPIFFVF
VIGTQERINTKLVRRNNFKTAKG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgccacagttttttattaaccgcccagtatttgcatgggtgatagccctctttatcgta
ctgattggtgtcatctcgattccgcaattacctatctctcgctacccttcggttgccccc
gtgtcggtgagcatttatgccgcttatccaggagccacgccacagacacttaatgactct
gtgataagccttgtcgagcgtgaactatcgggggtaaaaaacctactgtactttgaatca
tcagttgacagctcaggaagtgcacaaattaccgccaccttcaaaccgggcacagatgcg
gaacttgcccaagttgatgtgcaaaatcgcattaaggcagtcgaaccacgcttacctcaa
gtcgtacggcagagcggtctgcaggttgagtcggcggcatcgagctttctgatgatgatt
ggcatgacgtcacctaatggtcaattcgacgaagtcgcgctaaacgactatttggcgcga
aatgttgtcgaggaactacgccgaatcgacggtgtgggacgagtgcaattatttggtgca
gagcaagccatgcgtgtctgggttgaccccaataaactcaccgcctatgggctgacaatg
aacgaccttgctctggcgattgaacagcagaacgcacaaatagccccaggccgactcggt
gatgagccagccttgcccggacaacgcctaacagtcccattgaccgtacaaggacaactg
accacacccgaggagttcgccgctattgccctacgttccagtgtcgatggcgccaaattg
gtgttggctgatgtggctagagttgagctgggcgctcagtcctatggcttttcgaaccgt
gagaatggtgtaacggcaaccagtgccgcgattcaactatccccaggcgccaacgccgtt
cgcaccgcttcagcagtgcgagaacgcttagccgaactagcaaccagcatgccctcaggc
ataagctattcagtgcccttcgacacagcacctttcgtcaaagtgtctatcaaaaaagta
atctataccctgtttgaagctatgggcttagtgtttctggtcatgttcctgttcttgcag
aagctgcgctacacactaattccagccatcgtcgcccccatcgcattgctcggcaccttt
gccgtaatgttgctggcgggtttttcaataaattcgctgactatgtttggcatggtattg
gccattggcattattgttgacgacgctattgtggtggttgaaaacgtggaacggctgatg
gcgacccaagggttatctcccaaagaagcgacctcacgggcgatgaaggaaattactggt
gcggtaataggtataaccttagtgctaacggctgtgtttattcccatggcctttggtacc
ggctcggtgggcgttatctatcaacaatttagtttggctatggcggtgtcgatcttaatt
tcagccttcctcgccctgtctttaaccccagctctatgttcgacactattgcatcctgtc
agtgcagatcaccaacacaaaagcggattttttggtgcttttaaccgcgccttcgaacgc
ttgacgactcgttacagtgcacggttagtacacttggtagggcgtagcgggcgaatgatg
gcagcatttgcagtgatctgcgctgtactcgtattagcggttaaggaattaccttcgtcc
ttcctacccgacgaagatcaaggctacttcatgacctctattcaattacccactggcgca
acgagcgaacgtacactagaagtggtaaaaaaatatgaagcacacgtagctactcgccca
acattggataccaatatggtagtacagggctttagctttgcaggctcaggcccaaacgcc
gccatggctttcactatgctcaaagattgggataaacgtaatggtgccacagcggcagag
gaagcagaacttgcacaacaagctatggcagataacgtcgaaggcactgtcatgagcctg
atgccacctgccatcgacgagctggggacttcatcaggcttcactctatacctgcaagat
agagccaaccgtggtgaaacggcgttacttgctgcacaggcgcaactgctcgagttagcg
gctcaaagcaaggtggttagcaatgtctacccagatggtttaccgcccggtgaaagcatt
aacctaaatataaatcgaccaaaagccgaggctatgggcctgtctttcgcagcggtaagc
agcacgctttcggcagccatgggatcacagtatgtcaatgattttccgaataatggacgt
atgcaacaagtcattcttcaagcggaagcgtctgcacgtatgcagctagatgacgtgcta
agcctgcgggtgcgtaatactagcggtggcatggtacctctgcgggaggtagtgacaccc
aaatggagtgaatcgccacagcaaatgatgcgctttcaaggctttccggcagtacgaatt
tcgggaggtgctgcgccaggtgtttccagcggagcttccatggcagaaatggaacgccta
gtggcacagttaccactaggctatgcgatagcgtggacaggggcatcattacaggaacgc
caatcggctgcacaggcgccgctgctgatgttgttgtctgcgctggtggtatttttagtt
cttgctgcactgtacgaaagctggtcgattccgctatcggtaatgctggtagtaccgctg
ggactcatcggagccgtggcagctgttatgctacgaggcatgcctaatgacgtgtttttc
aaggtggggatgattaccatcattggcttatcggcgaaaaacgccatccttatcgtcgaa
tttgcccgtcaattacacgccgagggacgcagtttggtcgatgcagcagtaaccgctgca
cggctgcgtctgcgtccaatcttgatgacttcgctagctttcacccttggcgtagtccct
ttgatgcttgcaagcggcgcgagtgcagaaactcaacacgctattggcaccggcgttttc
ggcggtatgcttagcggaaccatactagcaatattctttgttcctatcttttttgtcttt
gtcatcggcacacaagagcgcattaataccaagctagtaagacgtaataatttcaaaacg
gccaaaggataa
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integrated database retrieval system
