Shewanella sp. Pdp11: AYJ58_18305
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Entry
AYJ58_18305 CDS
T11329
Name
(GenBank) multidrug efflux RND transporter permease subunit
KO
K18299
multidrug efflux pump
Organism
shep Shewanella sp. Pdp11
Brite
KEGG Orthology (KO) [BR:
shep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shep02000
]
AYJ58_18305
01504 Antimicrobial resistance genes [BR:
shep01504
]
AYJ58_18305
Transporters [BR:
shep02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
AYJ58_18305
Antimicrobial resistance genes [BR:
shep01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexEF-OprN [MD:
M00641
]
AYJ58_18305
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
AUD61304
LinkDB
All DBs
Position
complement(4235713..4238871)
Genome browser
AA seq
1052 aa
AA seq
DB search
MLSQFFIKRPIFAAVLSLLFFITGAIAVWQLPITEYPEVVPPTVVVTANYPGANPKVIAE
TVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQNQVQSRVDRAMPRLP
QEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGVGAVRLFG
AGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGNADFQLLINVKGR
LTELSEFEDIIVKVGQNGEVNRLKDVARIELGATSYALRSLLDNKDAVAIPVFQASGSNA
IQISDDVRAKMAELSQSFPEGLEYEIVYDPTVFVRGSIEAVIKTLLEAVLLVVLVVVLFL
QTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERN
IAAGLNPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFI
SAINSLTLSPALSALLLKSHDAPKDGLTRLMDKLFGAWLFTPFNRLFSRASDGYGYLVRK
VIRFGGIIGLVYLGMVALTGVQFANTPTGYVPGQDKQYLVAFAQLPDAASLERTDTVIKK
MSEIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALDDFESRKSPALSANAIAGQLNQ
EFAGIQDAFIAIFPPPPVQGLGTIGGFRLQIQDRANLGYEALYQVTQQVMYKAWADPQLA
GIFSSYQVNVPQLELDIDRTKAKQQAVSLDQIFQTLQTYMGSTYVNDFNRFGRTYQVNMQ
ADEAFRQSPQQISQLKVPNLKGDMIPLGSFINVSQSSGPDRVMHYNGFTTAEINGGPAAG
VSTGQAQAAIEKILAETLPNGMTYEWTELTYQQILAGNTGLLVFPLVILLVFMVLAAQYE
SLSLPLAIILIIPMTLLSALSGVLIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKEKQ
DHGMAPMEAILEAARLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIGV
TVFGLILTPLFYYALAKRGSKKVEEHKELTIS
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcgcagtttttcattaaaagaccaatatttgcagccgtactctcactgctgttt
tttatcacaggggcgattgccgtttggcagttgccgatcactgaataccctgaagttgtg
ccgccaaccgtcgtagtgaccgctaactatccaggcgctaaccctaaagtgattgccgaa
accgtggcctcgccgctggagcaggaaattaacggcgtcgaagacatgctgtatatgtca
tcgcaggcgacatcagatgggcgcatgaccttgaccatcacctttgcgattggcacagat
gtagacagggcgcaaaaccaagtacagagccgtgtcgatcgcgctatgccacgtttgcca
caggaggttcaacgcctcgggattgtgaccgagaaatcatcgccagacttaaccatggtg
gtgcatttgctgtcgccagataaccgttatgacatgctgtatttgtctaactacgcggcg
ctcaacgtaaaagatgagttagcacgtatcaagggtgtgggcgcggtacgcttgtttggc
gcgggggaatacagcctgcgtatttggcttgacccgaataaagtctcggcgctgggttta
tcgccagcggacattattgccgccgtgcgcgagcaaaaccaacaggcggcagcgggcagt
ttaggtgctcagcccagtggcaatgctgacttccaactcttaattaacgtgaaaggccgt
ttaactgaactgtctgaatttgaagatatcattgtcaaagttggccaaaacggtgaagtg
aatcgtctgaaggatgtggctcgtatcgagctaggtgcgaccagttatgcgctgcgctca
ctgctggataataaggatgccgtggctatcccagtgttccaagcatcggggtcgaatgcg
attcagatttccgatgatgtgcgcgccaaaatggcggaattgtcacagtctttccctgaa
ggactcgaatacgaaatcgtatacgatccaaccgtcttcgtgcgtggctcgattgaggct
gtgatcaaaaccttgctcgaagccgtgttgctggtggtgttagtggtagtgctgtttttg
caaacttggcgcgcctcgattattccgctggtggctgtgcctgtatcgttagttggtacc
tttgcctttatgcatctgctcggcttctcactcaacgccttgtcgttattcgggctggta
ctcgccattggtattgtggtggacgatgccatagtcgtggttgaaaacgtcgagcgtaat
attgccgctggcttaaaccctgttgcggcaacgcaaaaggcgatgaaagaagtgacaggc
ccaattgtggcaaccaccttagtgctggcggcggtgtttattccgacggcgtttatgagt
ggcttaactgggcagttttataaacagtttgctttaactattacaatctcgacctttatc
tcggcgattaactcactgactttgagcccagcgttatcggcgttattactcaagagccat
gatgcgccaaaggatggtttaactcgtttaatggacaagttgttcggtgcttggttgttc
acgccttttaaccgcttatttagccgtgcctctgatggctatggttacttagtgcgtaaa
gttatccgttttggcggcattatcggcctagtgtatttaggcatggtcgcgctaacgggt
gtgcaatttgctaatacaccaacgggttatgtgccggggcaagataaacagtatttagtg
gcctttgcccagttgcccgatgcggcgtcccttgaacgtaccgataccgtgatcaaaaag
atgtctgagattgcgcttaatcacccgggtgtggcgcactcgattgccttcccaggcctg
agtatcaacggttttactaatagtcctaactcaggcgtggtgtttgtcgcgcttgatgat
tttgaatcgcgtaagagtccagcgctatcggcaaatgccattgcagggcaattgaatcaa
gagtttgccggtattcaagacgcgtttattgccatcttcccgccgccacctgtgcaaggc
ctcggcactataggagggttccgtctgcaaattcaagacagagccaaccttggttatgag
gccttgtatcaggtgacccaacaagtgatgtacaaggcgtgggccgatccacaattagcg
gggattttctctagctatcaggtgaacgtgccgcaacttgaactggatattgatcgaact
aaagcgaaacagcaggcagtgtcgctcgatcaaatcttccagacattacaaacctatatg
ggctcgacctatgtcaacgatttcaatcgtttcggtcgaacctatcaggtaaatatgcaa
gccgatgaggcgttccgtcaaagcccgcagcaaataagtcagctgaaggtgccgaatctg
aagggtgacatgatcccgctagggtcgttcatcaacgtcagccaaagctctggcccagac
cgagtgatgcactataacggctttacgaccgctgaaatcaacggtggtccagcagcaggt
gtgagtactggccaagcgcaggcggcgattgagaaaatcctcgccgagacgctgccaaac
ggtatgacctacgagtggacagagctgacttatcagcaaatcttagcgggcaatacgggc
ttgttagtcttcccgctggtgatcttgctggtgttcatggtactcgcagcccagtacgag
agcttaagtctgccattggcgattatcttaatcattccaatgaccctgctctcagccctc
agtggagtgttaatttacggtggcgacaacaatatcttcacccaaattggtctgatagtg
ctggtggggctggcaactaaaaacgctatcttgattgtcgagtttgcaaaggagaaacaa
gatcacggcatggcacctatggaggcgatattagaggccgcaagattacgtttacgtcct
atcttgatgacatctatcgcctttattatgggagttgtgcctatggtgttctccaccggt
gcgggcgctgagatgcgtcaagccatgggcgtagcagtgttcgccggtatgattggggtg
actgtgtttggtcttatcctaacgcctttgttctactacgcactggcaaaacgaggcagt
aaaaaagtcgaagagcataaagagctaaccatcagttaa
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