Slackia heliotrinireducens: Shel_26670
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Entry
Shel_26670 CDS
T00981
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shi
Slackia heliotrinireducens
Pathway
shi03030
DNA replication
shi03410
Base excision repair
shi03420
Nucleotide excision repair
shi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shel_26670
03410 Base excision repair
Shel_26670
03420 Nucleotide excision repair
Shel_26670
03430 Mismatch repair
Shel_26670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shi03032
]
Shel_26670
03400 DNA repair and recombination proteins [BR:
shi03400
]
Shel_26670
Enzymes [BR:
shi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Shel_26670
DNA replication proteins [BR:
shi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Shel_26670
DNA repair and recombination proteins [BR:
shi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Shel_26670
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shel_26670
MMR (mismatch excision repair)
DNA ligase
Shel_26670
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shel_26670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Auto_anti-p27
EME1-MUS81_C
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ACV23666
UniProt:
C7N3E3
LinkDB
All DBs
Position
complement(2944540..2946666)
Genome browser
AA seq
708 aa
AA seq
DB search
MEQTSLFDADESAATVSDVKARIDALRKEIEHHTYLYYAKDAPEISDAAFDSLMRELREL
ELANPQYIDPTSPTQRVGGYVGEQFSPVRHAVRMYSLDNAMGLDELDEWLARTLEAIGHP
VQFCCELKIDGSSIALTYEAGVLTKAATRGDGTTGEDVTVNMRTVRDIPLRLRDDGMAGL
RDSDASIEVRGEVYMPKSSFEKLNAAAEATGKQGFANPRNAAAGSLRQKDPKITQNRDLA
TFLYAIADDAPIRAESQNDLLEWLRDCGFHVNPDVKLCDTPQEVHDFCEQVAEKRDSLPY
GIDGVVVKVNDFATQRDMGFTARAPRWAIAYKFPPEEKTTVMHDITVQVGRTGACTPVAE
LDPVLVDGSTVARATLHNLDEVRRKDVRIGDTVIVRKAGDVIPEILGPVLSLRPEGAKPW
EMPATCPSCGSPLVREEGEAAFRCVSIDCPAQAMERLIHWASRGAMDIDGMGDEIVARLV
ESGRVLDVADYYNLTEYDLATLETGRINKEGEPIHLGGTIAAKLMASLEASKSRTFARVL
FGLGIRHVGKTTGEAIAAAYPSMEKLMNATEEGLAQVDGIGAVIAKSIVTFLATEDNREV
IHRLERAGVTMADEVKESDIPQTLAGITFVLTGSLTESGMTRTEAGDRLKAMGAKVSGSV
SKKTGYVVAGEAAGSKYDKAVQLGVPVLTEAEFLRLLEAGSLEAAGLA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaccagtttgttcgacgccgacgaatccgcggcaaccgtcagcgatgtgaag
gcccgcatcgacgcgttgcgtaaggaaatcgaacaccacacctatctgtattacgccaag
gacgctcctgagatttcggacgcggcatttgactcgctcatgcgcgagctgcgcgagctg
gaactggcgaatccccagtacatcgaccctaccagccccacgcaacgcgtcggcggctac
gtgggcgagcagttcagccccgtgcgccacgccgtgcgcatgtattcgctggacaacgcc
atgggtctcgatgagctggacgaatggttggcccgcacgctggaggccatcgggcacccg
gtgcagttttgctgcgagctgaagattgacggctcgtctatcgcgctgacctacgaggcg
ggcgtgttgacgaaggcggctacccgcggcgacggcaccacgggcgaagacgtgacggtg
aacatgcgaaccgtgcgcgacatcccgctgcgcctgcgggacgacggcatggccgggctg
cgggattcggacgccagcatcgaggtgcgcggcgaagtgtacatgcccaagagcagcttc
gagaaactgaacgcggccgccgaggccaccggcaagcagggcttcgccaacccgcgcaac
gcggcggcgggctcgctgcgccagaaggatccgaagatcactcagaaccgcgatttggca
acgttcctgtacgccattgccgacgacgccccgattcgtgcggaatcccagaatgacctg
ctggaatggttgcgcgactgcggctttcacgtcaatccggacgtcaagctgtgcgacacg
ccgcaggaagtgcacgacttctgcgagcaagtggccgaaaagcgagacagcctgccgtac
ggcatcgacggcgtggtggtgaaggtgaacgatttcgccacccagcgggatatgggcttt
acggcccgtgcgccgcgctgggccatcgcgtacaagttcccgccggaggagaagaccacc
gtcatgcacgacatcaccgtgcaggtgggtcgcaccggcgcctgcacgcccgtggcggag
ctcgaccctgtgctggtggatggttccactgtggcccgcgccacgctgcacaatctggac
gaggtgcgccgcaaggacgtgcgcatcggcgacacggttatcgtgcgcaaggccggcgac
gtgattcccgagattctggggccggtgctttcgctgcgccccgaaggcgcgaaaccttgg
gagatgcccgccacctgcccgagctgcggtagccccctggttcgcgaagagggcgaggcc
gccttccgctgcgtgtccatcgactgcccggcgcaagccatggagcgcctgatccactgg
gccagccgcggcgccatggacatcgacggcatgggtgacgaaattgtcgcgcgcctggtg
gagtccgggcgcgtgctggacgtggccgactactacaacctgacggaatacgacctggcc
acgctggaaacgggccgcatcaacaaggagggcgagcccatccatctgggcggcaccatc
gcggccaagcttatggcgtcgctggaggcgtcgaagtcccgcaccttcgcccgcgtgctg
ttcggtttgggcattcgccatgtgggcaagaccaccggcgaggccattgcggcggcctac
ccaagcatggagaagttgatgaacgccaccgaggagggcttggcccaggtggacggcatc
ggcgcggtcatcgcgaagagcatcgtgacgtttttggccaccgaggacaaccgcgaggtc
atccataggctcgagcgggcgggcgtgaccatggccgacgaggtgaaagagagcgacatc
ccccagacgcttgccggcatcacgttcgtgctgaccggatcgctgacggaaagcggcatg
acccgcaccgaggcaggcgaccgcctgaaggcgatgggtgcgaaggtgtccggcagcgtg
tcgaagaagaccggctacgtggtggccggcgaggccgcaggcagcaaatacgacaaagcc
gtgcagctgggcgtgcccgtgctgacagaggccgagttcctacgcctgctggaggcgggg
tcgctggaggcggcggggttggcgtag
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