Shinella sp. XGS7: LHJ69_20090
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Entry
LHJ69_20090 CDS
T10581
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
shin Shinella sp. XGS7
Pathway
shin01501
beta-Lactam resistance
shin01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
shin00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LHJ69_20090
01503 Cationic antimicrobial peptide (CAMP) resistance
LHJ69_20090
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shin02000
]
LHJ69_20090
01504 Antimicrobial resistance genes [BR:
shin01504
]
LHJ69_20090
Transporters [BR:
shin02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
LHJ69_20090
Antimicrobial resistance genes [BR:
shin01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
LHJ69_20090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
UDF34840
LinkDB
All DBs
Position
complement(4370819..4373878)
Genome browser
AA seq
1019 aa
AA seq
DB search
MRISETSIRRPVFATVMSLLLVLVGIVSFGKLSLREYPRIDEPVVTVSTRLVGASSEVIE
TQVTKPLEDSIAGIDGVDILTSISRSEQSQITVRFKLEKNPDDAAADVRDRVSRVRGRLP
DAVDEPIVAKVEADATPTIWLAFTSDTLDPLQITDLVNRVVKPRLQTVPGVADVQIGGDR
KYSMRVWLDADRLAAYKLTVQDVEDALRRQNLEVPAGRIESQQREFNVTARTDLNTVPQF
AEVALKQVNGFTVRLKDVARIEEAAASERSRVRLNGVPSVSLGVIRQATANPLEVSAGVR
EMMPRLQQDLPDSVKVLPANDNSVFIDRSIKSVYHTIAEAVVLVALVVFIFLRTLRASII
PLVTIPVSLIGAFALMAAAGFTVNTLTLLALVLAIGLVVDDAIVVLENIFRHIEEGLEPF
QAALKGAKEIGFAVVAMTLTLAAVFAPLAFTPGRTGRLFTEFALTLAGAVIVSGFVALTL
TPMMCSKLLRHNPKPTRFDQGMERVLVALSDRYASALRFVLGRRWLVVLVMLASGAYSWW
LFTHAKSELAPLEDRGVIFMPVSAPDGATLEFTSRYLDAIERIGASYPEFDRRFLFAGGS
TVSQATVIMRTVDWADRSISTQALARKLQPQLAGLPGITVFPVTPPSLGQGFRERPINYV
IVTSDSYANLANVTQQFMAALAKNPGFVQPDNDLRLNKPEVFLEVDRERAADLGVNVDQV
ARTVETMLGGRNVTRYKRDAEQYDVIVQTDNAGRTTPDHIEKLFVRGRNEAMIPLASLVK
VREAVSPRELNHFNQRRSVSITANLAPGYALGEALAFMDQTAREILPMGYATELNGVSRE
YKSSSGALGVVFVLALLFIFLVLAAQFESFIDPFVIMLAVPLSMVGALAALQWSGGTLNV
YSQIGLITLVGLITKHGILIVEFSNQLRQQGKALMEAVVEASALRLRPILMTTGAMVLGA
VPLALATGAGAESRQQIGWVIVGGMSFGTLLTIFVVPTMYTLFARKRVPGEISTPALAG
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatctccgaaacctcgatccgccggccggtcttcgcgaccgtgatgtccctgctg
ctggtgctggtgggcatcgtgtccttcggcaagctctcgctgcgagagtacccgcgcatt
gacgagccggtggtcaccgtcagcacccggctggtcggcgcctcctccgaggtgatcgag
acccaggtcaccaagccgctggaggattccatcgccggcatcgacggcgtggacatcctg
acctcgatctcgcgctccgagcagagccagatcacggtgcgcttcaagctggagaagaac
cccgacgacgccgcggccgatgtgcgcgaccgcgtctcgcgcgtgcgcggccgtctgccc
gatgcggtggacgagcccatcgtggccaaggtcgaggccgatgccacgcccaccatctgg
ctggccttcaccagcgacaccctggacccgctgcagatcacggatctggtgaaccgcgtg
gtcaagccgcgcctgcagaccgtgccgggcgtggccgatgtgcagatcggcggcgaccgc
aagtattcgatgcgcgtctggctggatgccgaccgcctggccgcctacaagctgacggtg
caggacgtggaagacgcgctgcgccgccagaacctggaggtgccggccggccgcatcgag
agccagcagcgcgagttcaatgtgacggcgcgcaccgacctgaacaccgtgccgcagttc
gccgaggtggcgctcaagcaggtcaacggcttcaccgtgcggctcaaggacgtggcccgc
atcgaggaggccgcggccagtgagcgctcgcgcgtgcgcctgaacggcgtgccctcggtc
tcgctgggtgtgatccgccaggccacggccaatccgctggaggtctcggccggcgtgcgc
gagatgatgccgcgcctgcagcaggacctgccggattcggtcaaggtgctgccggccaat
gacaactcggtcttcatcgaccgctccatcaagtcggtctatcacaccatcgccgaggcg
gtggtgctggtggccctggtggtcttcatcttcctgcgcaccctgcgcgcctccatcatt
cccctggtcaccatcccggtgagcctgatcggcgccttcgcgctgatggccgcggccggc
ttcacggtcaacaccctgaccctgctggccctggtgctggccatcggcctggtggtggac
gatgccatcgtggtgctggaaaacatcttccggcacatcgaggaggggctggagcccttc
caggcggcgctcaagggcgccaaggaaatcggcttcgccgtggtggcgatgacgctcacg
ctggcggccgtgttcgcgcccctggccttcacgccgggccgcacgggccggctgttcacg
gaatttgccctgaccctggccggcgcggtgatcgtctcgggcttcgtggccctgacgctg
acgcccatgatgtgcagcaagctgctgcgtcacaaccccaagcccacgcgctttgaccag
ggcatggagcgggtgctggtggccctgagcgaccgctatgccagcgctctgcgctttgtg
ctgggccggcgctggctggtggtgctggtgatgctggcctcgggggcctacagctggtgg
ctgttcacccatgccaagagcgagctggcgccgctggaggaccgcggcgtgatcttcatg
ccggtgagcgcgcccgacggcgccacgctggaattcacttcgcgctatctggatgccatc
gagcgcatcggcgccagctatccggagtttgaccgccgcttcctgttcgcgggcggctcc
acggtctcgcaggccacggtcatcatgcgcaccgtggactgggccgaccgcagcatcagc
acccaggcgctggcgcgcaagctgcagccgcagctggccggcctgccgggcatcacggtc
ttcccggtcacgccgcccagcctgggccagggcttccgcgagcggccgatcaactatgtg
atcgtcaccagcgacagctacgccaatctggccaatgtcacccagcagttcatggccgcc
ctggccaagaaccccggctttgtgcagcccgacaacgatctgcgcctgaacaagcccgag
gtctttctggaggtggaccgcgagcgcgctgccgatctgggcgtcaatgtggaccaggtg
gcccgcacggtggagaccatgctgggtggtcgcaatgtgacgcgctacaagcgcgacgcc
gaacagtacgacgtgatcgtgcagaccgacaatgccggccgcaccacgcctgatcacatc
gagaagctctttgtgcgcgggcgcaacgaggccatgatcccgctggccagcctggtcaag
gtgcgcgaggcggtgagcccgcgcgagctcaaccacttcaaccagcgccgctcggtgtcc
atcaccgccaatctggcgccgggttatgccctgggcgaggccctggccttcatggaccag
accgcgcgagagatcctgcccatgggctatgcgaccgagctcaacggcgtgtcgcgcgag
tacaagagcagcagcggcgccctgggggtggtgtttgtgctggccctgctcttcatcttc
ctggtgctggcggcgcagttcgagagtttcatcgatcccttcgtgatcatgctggccgtg
cccctgtccatggtgggcgcgctggcggccctgcagtggagtggcggcacgctcaatgtg
tattcacagatcggcctgatcaccctggtgggtctgatcaccaagcacggcatcctgatc
gtggagttcagcaaccagctgcgccagcagggcaaggcgctgatggaggcggtggtggag
gcctcggccctgcgcctgcgtcccatcctgatgaccaccggcgccatggtgctgggggcc
gtgcccctggccctggccacgggcgcgggtgccgagagccgccagcagatcggctgggtg
atcgtgggcggcatgagcttcggcaccctgctgaccatcttcgtggtgcccaccatgtac
accctgttcgcgcgcaagcgcgtgccgggcgagatcagcacgccggctctggcgggctga
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