Salvia hispanica (chia): 125187951
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Entry
125187951 CDS
T09851
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
shis
Salvia hispanica (chia)
Pathway
shis03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125187951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125187951
Enzymes [BR:
shis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125187951
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125187951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
125187951
NCBI-ProteinID:
XP_047940591
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All DBs
Position
5:complement(15940665..15953821)
Genome browser
AA seq
1221 aa
AA seq
DB search
MSATKFSVMVSLFNWMQKSKSSSLKRSKFRKFLDTFCRPKNGADYFAAIRLILPALDRER
ASYGLREHVLATCLIDALGISRDSPDSQRLLNWRKGGAKSGAFAGNFALVAAEVLQRRQG
MSSGDLTILELNELLDRLSTSENRSEKISVLSELIRKTNVQEMKWIIMIILKDLKLGISE
KSIFHEFHPDAEDLFNVTCDLKLVCEKLQDRSQRHKRQDIEVGKPVRPQLALRVSNAAAA
WKKLHGKEVVVECKFDGDRIQIHKNGADIKFFSRNFLDHPEYGYGMSDIIRENILVDRCI
LDGEMLVWDKSANRFAEFGSNQEIAKAAKDGLDSDRQLCYIAFDILYAGDTSVIHQSLKE
RHQLLQQFVKPIVGRLEILVPNGGLNTHRPAGEPCWSLIVHDVDGIERFFKETIDNRDEG
IVLKDLSSKWEPSDRSAKWMKLKPDYIRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAE
RPSPNAYPKRFLSFCRVGTGLSDEELNAVVTKLKPYFRKYEYPKKLPPNFYQVTNNSKER
PDVWVESPEKSIIVSITSDIRTIRSEVFTAPYSLRFPRIDRVRYDKPWHECLDVQSFVEL
VHSSNGTMQRAMDDTVIPENNPRRKKLSRGTKMNVSVVPSHFIQTDVSGVKGETSIFSNM
IFYFVNVPILHSLDSLHKLVVENGGTFSMNLNSSVTHCIASESKGIKFQAAKRQGDVIHY
SWLLECCSQKQSLPLHPKYFLFLSEETKKKLEEEVDEFSDSYFLDLNVTELQQILNNINK
IEDSKAIEYCKKFCPREEWVRFHGCRVYFHLPRQSLKYRNWEVPFELAIRRMKVGICSGG
GSIADTLSHATHLVIVCSPELGFDFDTLLNSFSEAQRLLLHRRNLQIVKSQWLDDCFERN
QKLPEDIYNLKPLQFQQVSSGESDEHKLAGEENDSLSRDASSSFGGVREEYAAPHEPRVV
SLPDRVTKRRRGRPTGTSTGKCKPLANLPRKTRPRAGKKPAKISEYESDNDASSGDKAHF
EVSSADCGSSAKVDNRKRAAVNQPRRARAARLRKKPVEINDDESEEGAAAVEEKTSDGNF
NPNPTTNERLRDTSSQQPVPDLHQTEAVKGSIPDTGKAVEQEIAEPSEYIARFDKSGVGQ
SSSKNPSEEYVDPVQSMLLSMLPGLATNKVESVGPVREEAGTRAPDHVNEEYKVGMDAEN
KAVKKRKVSYKDMASELLKDW
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccacaaagttcagtgtgatggtgagcctcttcaactggatgcagaagagcaag
tcctcctccctcaagcgctccaaattccgcaagtttctcgacaccttctgccgccccaaa
aacggcgccgactacttcgccgccatccgcctcatcctccccgctctcgaccgcgagcgc
gcctcctatggcctccgcgagcacgtcctcgccacctgcctcatcgacgccctcggcatc
tctcgcgactctcccgactcccagcgcctcctcaactggcgcaagggcggcgccaagtcc
ggtgccttcgctggaaacttcgctctcgtcgccgccgaggtgcttcagcggaggcaggga
atgtcttcaggggaccttactatactagagttaaatgaactacttgatcgtttatccact
tctgagaatagatcagaaaagatttctgttctttctgaactgataaggaaaacaaatgtt
caagaaatgaagtggataatcatgataattctcaaagatcttaagctgggaataagtgaa
aagagcatatttcatgaatttcaccctgatgctgaggacttattcaatgtcacctgtgat
ctaaaactcgtttgtgaaaagttacaagatcgcagtcagcggcataagcgacaggacatt
gaagttggcaaacctgtccgacctcaactagctttgagagtgagcaatgctgctgctgcc
tggaaaaagcttcatggaaaggaagtagtcgttgagtgcaaatttgatggtgatcgcatc
caaatccacaaaaatggagctgacataaaatttttctcaaggaattttcttgatcatcca
gaatatggatatggcatgtcagacattataagagagaatattctggtggacagatgtatt
cttgatggtgaaatgctggtctgggacaaatctgcaaatcgttttgcagagtttggttca
aatcaagaaatagccaaggctgccaaggatgggctcgatagcgatcgacagttgtgctat
attgcgtttgacatcctttatgctggagataccagtgttattcaccagagcttgaaggag
aggcatcaacttcttcagcaatttgtcaaacctatagtaggtcgtttggaaattttggtt
cctaatggcggccttaatacacatcgtcctgctggggaaccatgttggtctctaattgtt
catgatgttgatggcattgaaaggtttttcaaagaaaccattgataacagagatgaagga
atcgtcctgaaagatctcagctctaaatgggaacctagtgatcgtagtgcaaagtggatg
aagttgaagcctgattacatccgagcaggctccgatttagacgttcttataataggaggt
tactacggttctggacgtcacggaggcgaggtagcacaatttcttgtgggccttgcagag
cgtccaagcccaaatgcatatccaaaacgatttctttcattttgcagagtgggtacagga
ctttctgacgaagagctcaatgctgttgtcaccaaattgaagccctatttcaggaagtat
gaatatccaaagaaactgcctccaaacttttatcaagttacaaataattcaaaggagagg
ccagatgtttgggttgagagcccagaaaaatcaattatagtttccataaccagtgatatt
cgaacaatcaggtcagaggtatttactgctccatatagcttgagatttccgcggattgat
cgtgtgagatatgacaagccttggcatgagtgccttgatgtccagtcttttgttgaatta
gtccattcaagcaatggtactatgcaaagggcaatggacgacacagttattccggaaaat
aacccaagacgtaaaaagttatctagaggaacaaagatgaatgtctctgttgttccttcc
cacttcattcaaactgatgtttctggggttaagggtgaaacatcgatattttcaaacatg
atattctactttgttaacgtgcctatattgcattctcttgattccttgcacaaattggtg
gttgagaatggcggcactttttcaatgaatttgaacagttcggttactcactgtatagca
tctgaaagtaaaggaatcaaatttcaagctgcaaagcgccagggagatgttattcattac
tcttggctccttgaatgttgttcgcagaagcagtccctccctttacacccaaagtatttt
ctttttctatccgaggaaacaaagaaaaagctggaagaagaagttgatgagttctccgat
tcctactttttggatttgaatgtgacagaactgcaacagatattaaacaacatcaataag
attgaagattccaaagcaatagagtactgcaagaaattctgtcccagggaggagtgggta
cgctttcatggttgtcgtgtttacttccatctacccaggcaatctttaaaatatagaaac
tgggaagttccatttgaactagctattagaaggatgaaggttggaatctgcagtggaggt
ggcagtattgcagacacactttctcatgctactcatttggtgattgtctgtagtccagaa
cttggtttcgactttgatacacttttgaatagtttttcagaagcacagaggcttcttttg
caccgtagaaatttgcaaattgtaaagtcccagtggttagatgattgttttgagagaaac
cagaagttgcctgaggacatatataatttgaagcccttgcagttccaacaagtatcaagt
ggggagagtgatgaacacaaacttgctggagaagaaaatgatagcttgtcgagggatgct
tcgtcttcttttggaggggtgagagaagagtatgctgcaccacacgagccaagagtagtc
agcctgccggatagggtcacgaaaaggagaagaggcagacccactgggacgagtactgga
aaatgcaaaccactggccaatctgccccggaaaacaagaccacgggctggaaaaaagcct
gctaagatcagtgaatatgaatccgataatgatgcttcttctggtgacaaggcacacttt
gaagtcagcagcgcagattgtgggagttccgcaaaggtagacaatagaaagagagcagct
gtaaatcaacctagaagagcaagggcagcccggcttagaaaaaagcccgtcgagatcaac
gacgacgaatcagaagaaggcgcagcagcagtagaggagaaaacctcggatggaaatttc
aaccctaatccaacaacaaatgagaggctccgcgacacttcaagccaacagccggttccc
gatttgcatcagaccgaggcagtgaaaggttctataccagatactggcaaagcagtcgaa
caagagattgcagaaccgagcgagtacattgcaagatttgacaagtctggagtcgggcag
agcagcagcaagaacccaagtgaagaatatgttgatccggttcagtcgatgctactaagc
atgttaccgggacttgcaacgaacaaggtggagagtgtgggaccggttcgtgaagaggct
ggaacaagagctcctgatcatgtcaatgaagaatataaagtgggaatggatgcagaaaat
aaagcagttaagaaacggaaagtaagctacaaggatatggcaagtgaacttctcaaggat
tggtga
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integrated database retrieval system
