Salvia hispanica (chia): 125189184
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Entry
125189184 CDS
T09851
Name
(RefSeq) DNA repair protein RAD16
KO
K15083
DNA repair protein RAD16
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shis03400
]
125189184
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
125189184
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4_2
zf-C3HC4_3
zf-C3HC4
zf-RING_5
DEAD
zf-RING_2
Prok-RING_4
zf-RING_UBOX
ResIII
zf-rbx1
zf-RING_Vps41
zf_RING_Vps8_fungal
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
125189184
NCBI-ProteinID:
XP_047942398
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Position
5:complement(861743..869340)
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AA seq
893 aa
AA seq
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MRLRSHADGASSSKGKRKPKYRDGSDAEDYGVDPSSDSDFDVPSDDGEDLLDALDNSTAM
FNLNYISDEDGVAKRRKTNSYGKSASSKKVEEESERCSDADIETGTGIDLEKIEYASGIA
EKFLTKRKGKKKKDRPILMWEVLEEENDRWIEENLQMDMDLMNQNEISMETAEPSEDLII
PLLRYQKEWLAWALKQEESSARGGILADEMGMGKTLQAIALVLFKRSISAGIPDAYVPSS
SGSSSKELPQIKGTLVICPLVAVMQWVREIDRFTADGSTKVLVYHGANRAKNLYQLSDYD
FVITTYAIVEAEYRKYVMPPKDKCQYCGKLFYEHKLKIHLKYMCGPGAVRTVKQAKQQRK
EPKGKKMPDLEINTRELNKGNKNGIGCKEMENDDSVDNSDMATSKGKSILHCAAWERIVL
DEAHCIKERRSNTTRAVLALQSRYKWALSGTPLQNRVGELYSLIRFLQIVPYSYYFCKDC
DCRTLDYSTAECPGCEHKNVRHFCWWNRYVSTPIQDSGRKGGGRGAMILLKHKILKSLVL
RRTKKGRAADLALPPRIVTLRRDSLDVVEEDYYTALYNESQAQFNTYVDAGTLMNNYAHI
FDLLTRLRQAVDHPYLVEYSLTSMERKGKAVDTGSDVKCGLCNDTEEDTVVTSCGHTFCK
PCLIDFSASMGQNSCPTCSKPLTVDFTANKAGKEPRSKTTVKGFRPSSILNRIRLDDFQT
STKIDALREEIRFMVERDGSAKAIVFSQFSSFLDLIHYALQKSGVQCVQLDGSMSMGARD
TAIKKFTEDPSCRVFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQFK
PIRIVRFIIENTVEERILKLQEKKELVFEGTVGGCSEALAKLTEADLRFLFVT
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgaggcttcgctctcacgccgatggcgcttcttcttccaaagggaagcggaaaccgaag
tacagagacggttctgatgcggaagattatggagtggacccgtcctccgattctgatttt
gacgttccgagtgatgatggtgaagatctgcttgatgcacttgataacagtacggcaatg
ttcaatttgaactatataagtgatgaggatggtgtcgcgaagaggaggaaaacgaactcc
tatgggaaaagcgcaagtagtaaaaaagttgaagaggagagtgagagatgctcagatgca
gacattgagactggtactggcatcgatctagagaaaatcgaatacgctagtggaatagct
gagaaatttctcacgaaaaggaagggaaagaagaaaaaagataggcctatactaatgtgg
gaagtattagaagaagaaaatgatagatggattgaagagaatttacaaatggatatggac
ctgatgaatcagaatgagatatcaatggaaactgctgagccttcagaggacttgataata
ccactactaagataccagaaggagtggttagcttgggctttgaaacaagaggaatcttct
gcccgaggtggcatccttgccgatgagatgggaatgggcaagactctccaggcaatagca
ctcgttctttttaaaagaagcatctcagcaggaattcctgatgcttacgtaccctcatct
tcaggcagttcctcaaaggagttgccacaaataaagggcacacttgttatatgtcccctg
gttgctgtgatgcagtgggttagagagattgatcgattcactgccgatggaagcaccaaa
gtccttgtctatcatggtgccaaccgagcaaaaaatctttatcagctttcagattatgat
tttgttataacaacatatgcaattgttgaggcagaatacagaaaatatgtgatgcctcct
aaagacaaatgccagtattgtggaaaattgttttatgagcataagttgaaaattcacttg
aaatatatgtgcggacctggtgctgttcggactgttaagcaggcaaagcagcaaagaaag
gaaccaaagggcaagaaaatgccggatctcgagattaatacaagggagctaaacaaaggg
aacaaaaatggcattggttgcaaggaaatggaaaatgatgattcagttgataattcagat
atggccacatccaagggaaaatctattctgcactgtgcggcttgggaacgtattgtgttg
gatgaggctcattgtattaaagaaagacgtagcaatacgactagagctgttcttgctcta
caatctagatacaagtgggctttaagtggtactcctcttcagaatcgtgtgggcgagctc
tactcacttattcgctttctccagatagttccttactcgtattatttctgcaaggattgc
gattgtcgtacgcttgattacagtacagcagaatgcccaggatgtgagcataaaaatgtt
cggcacttttgctggtggaatagatatgtttctacaccaattcaagattctggcaggaag
ggaggtggtagaggtgctatgattttgttaaaacacaaaatcctgaaaagcttagtgtta
agacgtacaaaaaagggtagagcagctgatcttgcgctaccccctagaattgttacattg
agaagagattctctcgatgttgttgaagaagactattatacagctctctacaacgagagt
caagcgcagtttaatacatacgtcgatgcaggaacgctgatgaataactatgcccacata
tttgatctactgacacgccttcgtcaggcagttgatcatccctacctcgtggaatattct
cttacttcaatggaaagaaagggcaaagcagttgatactggaagtgatgtgaaatgtggc
ttgtgtaatgacaccgaagaagacacagtggtcacatcatgtgggcataccttctgcaaa
ccctgtttgatcgattttagtgctagcatgggacaaaactcttgccctacttgttcaaag
ccacttactgttgatttcaccgccaacaaagctgggaaagaaccaaggtcaaaaacaact
gtcaaaggattcagaccatcaagtattttgaatagaatccggcttgatgattttcagaca
agtacaaaaattgatgctttgagggaagaaattcgatttatggttgaaagggatggttca
gccaaggcaattgtcttcagccagttctcgtctttcttggatctcatacactatgccctt
caaaagtctggagtgcagtgtgtccagttagatgggtccatgtcaatgggagctagagat
actgctataaaaaagtttactgaggatcctagttgcagagtctttctgatgagcttaaaa
gcagggggtgtcgccctcaatctcacggtagcatcacatgttttcttgatggatccatgg
tggaatcctgctgtggagcggcaggcgcaagacagaattcatcgaattggccaattcaaa
ccaataaggattgtgaggtttattattgaaaacaccgtggaggaaaggattttaaagttg
caggagaagaaggaattagtattcgagggcacggtgggtggatgttcggaggcactggcc
aaattaacagaagctgatctgagattcctgtttgtgacttga
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