Salvia hispanica (chia): 125193949
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Entry
125193949 CDS
T09851
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
shis
Salvia hispanica (chia)
Pathway
shis03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125193949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125193949
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125193949
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_2nd
Ig_NUP210_3rd
Ig_NUP210_15th
Ig_NUP210_9th
DUF6747
Motif
Other DBs
NCBI-GeneID:
125193949
NCBI-ProteinID:
XP_047947863
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All DBs
Position
6:complement(18984971..18992036)
Genome browser
AA seq
1930 aa
AA seq
DB search
MLPLLLLFLLHHATSFPTPGPHITDVNILLPPKMTYPVEYRLQASDGCFKWSWDHHDILS
VLPEFNASSRCSTSARLRSIAPYGGRKETAVYATDLNTGMVIRCKVYVDSISKIKIFHNS
VKLDLDGLATLRVRAFDSEDNVFSSLVGLQFMWQLMPETHEMPHSLVHVPLKESPLSDCS
GFCGDLDIQINLEESGVFSDFYVVKGTEIGHEIVSVNLLESSVGHLGDEIVITVAEAMSL
DPPSPVHVLIGAVVRYTLKVIRSNIPHVVSLPSPFHQWSVLNSSVAQVDRAVGTVHALNL
GVTAVAVEDTRVVGHMQISSLHVVIPDNMLLFMSPLSSSGDRIEDIEPIPSVSRWYVVAG
RLYIILVKVFSPGPGAHEIYITESDEIKLHSNQDEFWNILPLSEGATAMSNYRMLDAKSY
GLGKLTATLAYHTGHDVKKEVLKVFQEVMVCEQIKFINEGGSGDVEKILLPWVTGVYQEL
ELKASGGCSMSSSDYKWFSSDMSIASVSVSGIVQAKKPGKATIRAVSIFDSLNYDEVVIE
VSVPHSMVLLPNFPTEAPVGSHVQASVTLKASTGAYFHACDAFRSFIRWKTESDSFIIVN
TSTEVFIPGIKEAAERHSIPYGLPCSWTNIYAASSGRTLVRATLIRDHQLAEHAGRESVV
LKASSPIAAFLPLIIHQASDGNQFGGYWFNWVHAESQNQLGSLDYLYLVPGTHLDVMLHG
GPERWGKDVEYVENVAVMAEQDGLVKDKISVHQIPTSYGNPYRIGCDSLGTFRLVFRRGN
LMGEDHHLPVVSEVQLLLICSFPSSIVIIADEAMNTPLAIQSAARAERLPSRMRTTPIKV
ANGRKIRASAVGLSDSGKAFANSSSIFLSWELAECEGLALWDETESSTLYSSWERFLILQ
NTSGLCTVRSTAVSFHSLGRNDLAAKFETSIDTLTDAIQLQLVSSLGVTPEFSLLFFNPE
ARLNISITGGSCFLDTLVNDTHIVEVIQQIPDYDCSQLTLAPKSLGSALVTVQDVGLVPP
LSASSTVQVADMDWIKISTGEQISIEKGSLQSINFLVGVSDGRTFDPSQYIYMKISVHIE
EDIVDVMENNDTPIVGNRYLCGGPTFTLQGTHLGVTTIYLSAFQHSGHEIVSQLFKVEVY
APPMVHPRDIFLVPGASYVLTVRGGPKIGSHVRYSSLDDQTAQVHKFSGQLSAISPGNST
LVATIYGVGDIMLCRAYGIVKVGIPSSAILNVQSEQLAVNCKMPIYPSLSEGNLFSFYEL
CNNFKWAVGDKDVLDFQGAEHAHGRGNRSLKTSLNELDLNFVQVLHGISAGKTKVAVSFS
CNFKNSNSLSKPMFYTASVSVSVVPDLPLALGSPITWILPSYYTSSDLLPLTSHAYGKGG
SLSDKGIAYSLLGPEKGKIDELRDNDLYIDGAKIITKDSDSVACILAKDKTSGRTDVASC
VRVAELDQIRMADEFHVHMVALDADLALPIRYHDVLGNPFHEAHNITLFEVETNYPHIVS
IGKYGHGTINFHAKSEGVALVQVSFVNNPRKAVYAVISVGPQLYPQNPVIHQGASLNFDI
KGLGDSASGQWFSSNESVVCIERLSGKAEATGEGTALVHFEGTSSSFKLHTTVTVLKGNI
VSVDAPNEVITNVPIPVEGYAFSVKFNDEVSGRKMLSSFDCAVNPPKIGFARPWKDPYTG
SMHCLFFPHSPQHLARSAVNTGGDSPHQVLVSIRASLTDDHQISGSASALFVGGFVLETD
GKNSLYMNLTPDSNKRVITLTGNTNVELSWLDRNNLIVRPIHGGNPAVAKYEISARGPSR
IQDHLVFSLPSTGQRVEVSVSYDPRDRETATKPANLTFWAAISALLFLLIFTVTFGIWYL
DRPDRSPPRVAFGSPGIAAPATPKRSSPAVVSEHSPRTPQPFIDYVRSTIDETPYYRQDF
RRRVNPQHTF
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgcttctcctcctcttccttcttcaccatgcgacgtcgtttccgacccccggt
ccccacatcaccgacgtcaacatactcctcccgcccaaaatgacctaccccgtcgagtac
aggcttcaggccagcgacggctgcttcaaatggtcgtgggatcatcacgacatactatcg
gtgttgccggagttcaatgcgagcagccgctgctcgactagtgctcggttgcggtcgatt
gcgccctacggcggccgcaaggagactgcggtttacgccactgacttgaacaccggaatg
gtgattaggtgcaaggtttatgtggattcaatatctaagattaagattttccataactct
gtcaagcttgatctggatggactcgctactctacgtgttcgagcatttgactctgaagac
aatgtcttttcctccctggtgggcctgcaattcatgtggcagttgatgcctgaaacccac
gaaatgccgcatagccttgtccatgttcctttgaaggagtctccattgagtgattgcagt
ggtttttgtggtgacttggacattcaaataaaccttgaagaaagtggtgttttttcagac
ttttatgtagtcaagggcactgaaattggccatgagattgtttctgttaatctgctggaa
tcatcagtggggcacttgggggatgaaattgtaataactgttgcagaagcaatgtctcta
gatcctccatcacccgtacatgtccttattggtgctgttgttcgatatactcttaaagtc
atccgtagcaatattccccatgttgtaagtttaccatctccgttccatcaatggtctgtt
ctgaactcttcagtggctcaagtggatagagccgtgggtacagttcatgcattgaacttg
ggggttacagcagttgctgttgaagataccagggttgtaggacacatgcaaatatcatct
ctacatgttgtcatacctgataatatgttgttattcatgtcacctctttcttcttctggt
gatcgtattgaggatattgagcccattccctccgtgtctcgctggtatgtagtggctgga
cgtctatatataattcttgttaaggtcttctctccaggacctggagcacatgaaatttat
ataacagaaagtgatgaaataaagttgcacagtaaccaagatgaattctggaatattctc
ccactttcagaaggtgctactgctatgagcaattatagaatgttggatgcaaaatcatat
ggtctgggaaagcttactgcaactttggcttatcacactggtcatgatgtaaagaaagaa
gttcttaaggtttttcaagaagtcatggtatgcgaacaaataaaatttattaatgaagga
ggcagtggtgatgtggaaaaaattctcctcccatgggtcactggtgtctatcaggaactg
gagcttaaagcaagtggaggttgctcaatgtcctccagtgactataagtggttttcttca
gacatgtctattgcttctgtatctgtctctgggatcgttcaggcaaaaaagcctgggaag
gcaactattagagcagtgtccatctttgattcattgaattacgatgaggtggttattgaa
gtttccgttccccattcgatggttttgctgcctaactttccaacggaagcacctgttggc
tcacatgttcaagcgtccgttacattgaaagcatcaactggtgcatatttccatgcatgt
gatgctttccggtccttcatcagatggaaaacggagagcgactcattcataattgtcaat
acaagtacggaagtatttattccaggcataaaagaagctgctgaacgacactccattcca
tatggtcttccgtgttcatggacaaacatatatgctgcaagttctggtcgaactttggtg
cgtgcaacattgatcagggatcatcaactagcagaacatgctggtagggaatctgttgtc
ttgaaagcatcctcgcctattgctgcatttttaccacttattattcaccaggcaagtgac
gggaaccagtttggtggttattggttcaattgggttcatgctgaatctcaaaatcagctg
ggcagtttggattatctgtatcttgtgcctggcactcacttggatgtaatgcttcacggg
ggaccggaaagatggggcaaggatgttgagtacgttgagaatgttgcagtgatggctgaa
caggatggtcttgtgaaagataagatttcagtccatcaaataccaaccagctatgggaat
ccatacagaatagggtgtgatagcttgggaaccttcagacttgttttcagacgtggaaac
ttaatgggagaagaccatcatttacctgttgtatctgaagtgcaattgttgcttatatgc
agctttccatcatcaattgtaataatagctgatgaagctatgaacacgcctctagctata
cagtctgcagctcgggctgaacggttgccgagcagaatgcgcaccaccccaattaaagta
gccaatggacgtaaaatacgagcatcagctgttggtcttagtgattcgggaaaagctttt
gcaaattcatcttctatctttttgagttgggaattagctgagtgcgaaggactggctctc
tgggatgagactgaaagttcaacattatattccagctgggaaaggtttttgatcttgcag
aatacatctggactctgtactgtgcgttccactgctgttagctttcactctttgggccgt
aatgatttagctgctaagtttgaaacttctatcgatactcttacagatgcaatccagctg
caactcgtttcgtctcttggagtcactccagaattcagcttgttgtttttcaatcctgaa
gctaggttgaatatctctataactggagggagctgttttctggacacattggtaaacgat
actcatattgtcgaagtaatacaacagatccctgattatgattgttcacaactaacactg
gctcctaaaagcctaggctctgcacttgtaactgttcaggatgttgggctagttcctcct
ctttctgcatcttcgactgtccaagttgcagacatggactggatcaagatttcaaccgga
gaacaaataagcattgagaagggaagtttgcagtctattaactttttggttggggtcagt
gatgggcgtacttttgacccttctcagtacatttacatgaaaattagtgtccacattgaa
gaagatatagttgatgttatggagaataatgacactccaatagttggtaatagatactta
tgtggtgggccaactttcacgttgcaaggcacgcatcttggagtgacaacaatatatctt
agtgctttccaacactctggacatgaaattgttagccagctgtttaaggtggaagtatat
gcaccaccaatggtacatccccgtgacatatttcttgtaccaggtgcttcttatgtgctt
acagtcaggggaggccctaaaattggttcacatgttcggtattccagtttggatgatcaa
actgctcaagttcacaagttctcagggcaactatcggcaatttcaccagggaacagtact
cttgttgccacaatttatggtgttggtgatatcatgctttgtcgagcatatggcatagtt
aaagttggaattccttcatcagccattttaaatgtccagagtgaacaacttgctgttaac
tgcaagatgccaatatatccttcgctgtcggaggggaatttgttttccttctatgaactc
tgtaacaatttcaagtgggctgtgggagacaaagatgtgttggattttcaaggggcagag
catgcgcatggtcgaggcaacagaagtctgaaaacatccttaaatgagcttgacctcaac
tttgtacaagttcttcacggaatatcagctggcaagacgaaagttgcagtttcgttctca
tgcaatttcaagaattccaattcgttgtcaaaaccaatgttctacactgcatctgtgtca
gtatcggtggtccctgatcttccacttgctcttggatcaccaataacctggatccttcct
tcttactatacctcttctgatctcttaccgttaacttcacatgcctacggtaaagggggt
tctttgagtgataaaggcattgcttattccttgttaggaccggaaaaggggaaaattgat
gagttacgtgacaatgatttatatattgatggtgctaaaatcataactaaggactcggac
agtgttgcatgcatactagcaaaagacaagacaagtggaagaactgacgttgcatcttgt
gtaagggtggcggagttggatcaaatcagaatggcggatgagtttcacgttcacatggtt
gctttagatgctgatcttgcccttcccatcaggtatcatgacgttcttggaaatcctttc
cacgaggcacataacatcactctgtttgaagtggaaactaactatcctcacattgtatca
attggcaaatatggtcatgggactatcaattttcatgccaaaagtgaaggtgtagctctt
gttcaagtgtctttcgtcaataatcctcggaaagcagtatatgctgtcatctctgttggt
cctcagctgtatccacagaatcccgtcattcaccagggagctagtctcaacttcgacata
aaaggtttaggtgattcagcatcagggcagtggttcagttccaatgagagcgttgtgtgt
attgaaaggctatctggaaaagctgaagccactggagaaggtacagccctagttcacttt
gagggtacaagttcgagtttcaagcttcatacaacggtcacggtgttgaaagggaacatc
gtctctgttgatgctcctaacgaggttatcacaaatgtgccaattccagtagaaggatat
gctttctcagtaaagttcaatgatgaagtttctgggagaaagatgctaagctcgtttgat
tgtgctgttaatccacctaaaatcgggtttgccaggccatggaaggatccttacactggc
agcatgcactgccttttcttccctcactctcctcaacatttagctcgttcagcagtcaac
acaggaggagattcgccacaccaggtgcttgtttctattcgagcttcgctgacggatgat
catcaaatttctggctctgcatctgctctcttcgttggaggatttgtccttgaaaccgat
gggaagaactcactgtatatgaacctgactccagactccaacaagcgtgtcataacccta
accggaaacaccaacgtcgagctcagttggctcgacaggaacaacctgatcgttagaccc
atccacgggggcaatcctgctgtagcaaagtatgagatcagcgcccgtgggccctccaga
atccaagaccatctcgttttctcactgccatcaactggccagagagttgaagtcagtgtt
agctacgatccccgtgacagagaaacagccacgaaaccagcaaacctcaccttctgggct
gctatatctgctctcctctttctactgatattcacagtgacctttggcatatggtacctt
gacagacccgatagatcgccgccacgagttgccttcggcagcccgggcattgcagcacct
gccacccccaagcgcagcagtccggccgtggtcagtgagcattcgcctcggacaccgcag
ccgttcatcgactatgttaggagcaccatagatgaaactccttattacaggcaagacttt
aggaggagggttaatcctcaacacaccttctag
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