Salvia hispanica (chia): 125205464
Help
Entry
125205464 CDS
T09851
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125205464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125205464
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125205464
Complex C
U5 SnRNP specific factors
125205464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFG_III
EFL1
Roc
Septin
Ras
SRPRB
FeoB_N
EF-G_D2
DO-GTPase2
Peptidase_C58
Motif
Other DBs
NCBI-GeneID:
125205464
NCBI-ProteinID:
XP_047960365
LinkDB
All DBs
Position
2:complement(35404536..35409678)
Genome browser
AA seq
987 aa
AA seq
DB search
MDDNLYDEFGNYIGPEIDSDDQESDREEEEEEELPEDEEAMSDDEHGPGKPNGWLATTED
VDMDGQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVRNLKFELGVKDST
TYVSTQFLLGLMSNPMLVRNVALVGHLHCGKTTFMDMLVEQTHHISTFDQNSEKHMRYTD
TRIDEQERRISIKAVPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTAALRLADGAVLIV
DAGEGVLVNTERAIRHAIQDRIPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNHI
TAASSTAGNVQVIDPALGNVCFASSSAGWSFTLQSFAKLYVKLHGVPFDANKFASRLWGD
YYYEPDTRSFKKKPPVSGAERSFVQFVLEPLYKLYSQVIGEHKKSVEATLSELGVTLSNA
AYRLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKDAAPRKVEHIYTGPKDSPIYEAME
NCDASGPLMVNITKLYPKSDCSVFDAFGRVYSGEIMTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLEYNEDVYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGIVS
IDWPRKKLGDFFQTKYDWDLLAARSIWAFGPEKQGPNILLDDTLSSEVDKSLLSAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLNRQSGQIIPTARRVAYSAFLMATPR
LMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCVSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatctttacgatgagtttggaaactatattggacctgaaatcgattccgac
gatcaggagagtgatagggaggaggaggaagaggaggaacttcctgaggatgaggaggct
atgtctgatgatgaacatggccctggaaagccaaatgggtggctagcaacaactgaggat
gttgatatggatggccaaattgtcctagccgaggataaaaaatattacccaactgctgag
gaggtctatggcgaagaagtggaaactttagtcatggatgaagatgagcagccacttgaa
cagcctattattaagcctgtgcgaaatctcaagtttgagttgggggttaaggattcaact
acctatgtatcaacacagttccttttgggtctcatgtcaaaccctatgctggtcaggaat
gttgctttagtaggccacctgcactgtgggaagaccactttcatggacatgttggtcgag
cagacgcatcacatatcaacctttgatcagaacagtgagaaacatatgcgatatactgat
acgagaattgatgagcaggagaggaggatatccatcaaggcagtgccaatgtctcttgtt
cttgaggatagcaattcgaaatcatatctttgcaatgttatggatactcctggtcatgtt
aacttttctgatgagatgacagctgctctgaggcttgctgatggtgcggtgttaattgtt
gatgctggagaaggagttctggtaaacacagaaagggcaatacgccacgcaatccaagac
cgcatccccattgtagttgtgataaacaaggttgacagattgataactgagctcaagttg
cctccaaaggacgcgtaccacaaactaaggcacacaattgaagtcatcaacaaccacatt
acggctgcatcttcaactgctggaaatgttcaagttatcgaccctgcccttggaaatgtt
tgtttcgcgagttccagtgcaggatggtcatttaccttgcaatcatttgctaagctatat
gttaaactccacggtgttccatttgatgctaacaaatttgcctctcgcctttggggtgat
tattactacgaacctgataccagaagttttaagaagaaaccacctgtaagtggagcagaa
cggtcctttgttcagtttgtgcttgaacctctttataaattatatagtcaagtgattgga
gaacataaaaagagtgtagaggccacactctctgaactcggagtgactttgagtaatgca
gcttatcgcttgaatgttaggccactgttaagattggcatgtagctctgtttttggtagt
gccacagggtttacagacatgctggttcaacacatcccatctgcaaaagatgctgcaccg
cggaaggttgagcacatctacactggtcctaaggactccccaatttatgaggccatggag
aactgtgatgcatcaggtcctctaatggttaatattaccaaactgtatcctaaatcagat
tgcagcgtctttgatgccttcggcagggtctacagtggagaaattatgactggccagacg
gtacgtgtactgggagaagggtattctcccgatgatgaagaagacatgacagtgaaagaa
gtgaccaaattatgggtctaccaagctcgttataggattcctattagcaaagcccctcct
ggttcttgggttctaattgaaggtgtggatgcttccattatgaagactgccacactctgc
aacttggaatataatgaagatgtctatatatttagaccccttcagttcaacactcttcct
gtggtgaaaactgctacagagccattgaatcccagtgagctgccaaaaatggtggagggt
cttaggaagatcagcaaaagctacccattagctatcacaaaggttgaagaatctggggag
catacaattttgggcactggagagttgtacttggattccataatgaaggacctcagggag
ctttattcagaagtggaagtaaaggtggcagatcccgttgtctcattttgtgaaacagtt
gtggaatcctcttcaatgaaatgctttgctgaaactccaaacaaaaaaaataaaattaca
atgattgcggagccactggagagaggacttgcagaggacattgaaaatggcattgtaagc
attgactggcccaggaaaaagcttggcgacttcttccagacaaagtatgactgggatttg
ctagctgcgcggtctatttgggcatttggtcctgagaagcaggggcctaatattttgttg
gatgatacactgtctagtgaagtggacaagagtttgctcagtgcagttaaagattctatt
gtgcaagggtttcagtggggagctcgagaaggccctctatgcgatgagccaatcagaaat
gttaaatttaaaatagtagatgccaagattgctcctgagccactgaaccgtcaatccggc
cagatcattccaactgctcgacgcgtggcttattcggctttccttatggctacacctagg
ctcatggaaccagtgtattatgtggagatacaaactccaatagactgtgtttccgcaata
tacacagttttatcgcgtaggcgtggtcacgtcactgctgacgttccacagccagggacc
ccagcctacatcgttaaggcatttttaccggtgatagagtcgtttggatttgagacagac
ttgaggtatcatactcaagggcaggcattttgcgtatccgtatttgatcactgggctatc
gtccctggagatccgttggataaaagtatagttctacgtccgttggagccagccccaatt
caacatttagctcgtgaatttatggtgaagacgaggcgccgcaagggaatgtcggaagat
gtgagcattaacaaattcttcgatgaggctatggttgttgaactggctcagcaggctgcc
gatcttcatcaacaaatgatctga
DBGET
integrated database retrieval system
