Salvia hispanica (chia): 125207231
Help
Entry
125207231 CDS
T09851
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
125207231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125207231
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125207231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
125207231
NCBI-ProteinID:
XP_047962439
LinkDB
All DBs
Position
2:9601935..9611983
Genome browser
AA seq
827 aa
AA seq
DB search
MGVPAFYRWLADRYPLCIVDVVEEEPGQDEGPVDISRPNPNGIEFDNLYLDMNGIIHPCF
HPEGKPAPATYADVFKSIFDYIDHVVSLVRPRRLLYLAIDGVAPRAKMNQQRSRRFRAAK
DAAAAEAEKDKLRKEFELEGEKLLPKGKTETSDSNVITPGTPFMAVLSVALQYYVQSRLN
RIPGWHFLKVILSDANVPGEGEHKIMSYIRLQRNIPGFDPNTRHCLYGLDADLIMLSLAT
HEVHFSILREVITFPGNQEKCFLCGQAGHLAAECRGGANGDGTKYADDTPIHKKKYQFLN
IWVLREYLGYELNIPNPPFEIDFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMF
VYRREFAAMGGYLTDAGEVFLDRVETFVQAVAVHEDQIFKKRTRIQQAYENNEEMKQRAR
GQASQNPNASAGDKVKLGEPGYKERYYSEKFGTSDPQKIDEIRSDVVLKFVEGLCWVCRY
YYQGVCSWQWYYPYHYAPFASDLKGLADLEITFFPGEPFKPFDQLLGTLPAASSTALPER
YRRLMSDPASPIVDFYPNDFEIDMNGKRFAWQGVAKLPFIDEKKLLSETKKLEETLTEEE
QFRNCVMFDLLYVHPRHPLAAQITIYYRLSGIEKSPWPVDAVASAGMNGFLWLTKRNDLK
RVIPSPVYGLEDITNNQAVNVTYLNPAPHAHTPKPPAGVNMPVQTVKSFDIKPAPTLWHE
DNGGRNQLGKERPQVSRAISGPILGEAAHRLVHNTLNIKSDRTNSFNFHGNHVANRMRPA
GPPGYEMGVSEIQNYPNRHASYRPRAAVPSGYGKCSDGKCSIQWGPK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcctgcgttttaccggtggctggcggatcggtaccctctgtgtattgtggat
gtggtggaggaggaaccaggtcaggatgaagggcctgttgatatatcaaggccaaaccct
aatggcattgagttcgataatttgtatttggatatgaatggtataattcacccttgtttc
caccccgaaggcaagcctgcacctgccacttatgcagatgtatttaaatctatctttgat
tacattgaccatgttgtatcattggttcgtccaagaaggctcctttatttggcaattgat
ggtgtggctcccagggctaaaatgaaccagcaaaggtctcgtcgtttcagggctgctaag
gatgctgctgcagctgaagctgaaaaagacaagttgaggaaagagtttgaacttgagggg
gaaaaactattgccaaaaggaaagactgaaacatctgattcaaatgttatcacccctggc
actccatttatggcagtgctctctgtagcacttcaatactatgtgcagtcaaggttgaac
cgaattcctggatggcactttctcaaggttattctttctgacgctaatgttcctggcgag
ggtgagcacaaaattatgtcttatattcgtttacaacgcaacattcctggttttgatcca
aacactaggcactgtctctatggactggatgctgacctgatcatgctctcactagctact
catgaagtccacttttcaatactgagggaggtgattacttttcctgggaaccaggaaaaa
tgctttctctgcggccaagcaggccatctggcagctgaatgtcgtgggggagccaatggt
gatggcacaaagtatgcagacgacactcccattcacaagaagaagtatcagtttctcaac
atctgggttttgcgagaatacttgggatatgagctgaatattccaaatcctccatttgaa
attgatttcgagagactggtggatgattttgtgttcttatgcttttttgtcggcaatgac
tttcttcctcatatgcccacattggaaattagagagggtgccataaatttgctcatgttc
gtatatagaagggaatttgctgcaatgggtggttatcttacagatgctggtgaggttttc
ttggaccgggttgaaacttttgttcaggcagttgcggtgcatgaagatcaaatttttaaa
aaaagaacccgtatacagcaggcatatgagaataatgaagagatgaagcaaagagcaagg
gggcaggctagtcaaaatcctaatgcttcagcaggggacaaggtgaaattgggggaacct
ggatataaagaaaggtattattctgagaaatttggtacatctgatccgcagaagattgat
gaaatacgatcagatgtggttttgaagtttgtggaagggctgtgttgggtttgccgctat
tattaccaaggtgtctgctcatggcagtggtactatccatatcattatgctccatttgca
tctgaccttaaaggcttagctgatttagagataaccttcttcccaggggagccttttaaa
ccctttgatcaattattgggaacactgccagctgcgagttctactgctctccctgaaaga
tacagaaggttgatgtctgatcctgcatcacctattgttgatttctatccaaatgatttt
gaaatcgacatgaatggaaaacgcttcgcatggcagggtgttgccaaattaccattcatt
gatgagaagaaattgctttctgagaccaagaaacttgaggaaactttaacggaggaagag
caatttcgaaattgtgtcatgttcgatttgttatatgttcatcctcgtcaccctttggct
gctcaaataaccatctactatcgtctttctggcattgaaaaatccccatggcctgttgat
gcagttgcgagtgctggaatgaatggatttttgtggttaactaaaaggaatgacttgaaa
agggttatcccttctccagtctacggtttggaagacatcacaaacaatcaagccgtaaat
gtgacatatctgaatccagcaccgcatgcccacactccaaaacctcctgctggtgtaaat
atgcctgtacagacagttaaatcgtttgacataaaacctgccccaacattatggcatgaa
gacaatgggggaaggaaccagctaggcaaagaaagaccacaggtttctagggcgatatct
ggtcctattttgggagaagctgctcatcgtctggttcacaatacgttgaacataaagtcg
gatcgcacaaattctttcaatttccatgggaatcatgttgccaacaggatgaggccagct
ggaccacctgggtatgaaatgggagtctcagagatccaaaattatccgaaccgccatgca
tcttataggccaagagcagccgtgccatctgggtatgggaagtgctctgatgggaagtgc
tcgatacagtggggccccaaataa
DBGET
integrated database retrieval system
