Salvia hispanica (chia): 125213978
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Entry
125213978 CDS
T09851
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
shis
Salvia hispanica (chia)
Pathway
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125213978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shis03041
]
125213978
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125213978
Complex C
U5 SnRNP specific factors
125213978
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
MMR_HSR1
EFG_III
EFL1
Roc
Septin
Peptidase_C58
Ras
SRPRB
FeoB_N
EF-G_D2
SOI
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
125213978
NCBI-ProteinID:
XP_047970763
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All DBs
Position
3:49085021..49089709
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AA seq
988 aa
AA seq
DB search
MDDNLYDEFGNYIGPEIDSDQESDREEEEEELPDRTEDEEAISDDEHGPGKPNGWLTTTE
DVDMDGQIVLAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEQPIIKPVRNLKFELGVKDS
TTYVSTQFLLGLMSNPMLVRNVALVGHLHCGKTTFMDMLVEQTHHISTFDQNSEKHMRYT
DTRIDEQERRISIKAVPMSLVLEDSNSKSYLCNVMDTPGHVNFSDEMTAALRLADGAVLI
VDAGEGVLVNTERAIRHAIQDRIPIVVVINKVDRLITELKLPPKDAYHKLRHTIEVINNH
IMAASSTAGNVQVIDPALGNVCFASSSAGWSFTLQSFAKLYVKLHGVPFDANKFASCLWG
DYYYEPDTRSFKKKPPVSGAERSFVQFVLEPLYKLYSQVIGEHKKSVEATLSELGVTLSN
AAYRLNVRPLLRLACSSVFGSATGFTDMLVQHIPSAKDAAQRKVEHIYTGPKDSPIYEAM
ENCDASGPLMVNITKLYPKSDCSVFDAFGRVYSGEIMAGQTVRVLGEGYSPDDEEDMTVK
EVTKLWVYQARYRIPISKAPPGSWVLIEGVDASIMKTATLCNLEYNEDVYIFRPLQFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGTV
SIDWPRKKLGDFFQTKYDWDLLAARSIWAFGPEKQGPNILLDDTLSSEVDKSLLSAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLNRQSGQIIPTARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFET
DLRYHTQGQAFCVSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSE
DVSINKFFDEAMVVELAQQAADLHQQMI
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggatgataatctttacgatgagtttggaaactatattggacctgaaatcgattccgat
caggagagtgatagggaggaggaagaggaggaacttcctgaccggactgaggatgaggag
gctatatctgatgatgaacatggccctggaaaaccaaatgggtggctaacaacgactgag
gatgttgatatggatggccaaattgtcctagctgaggacaaaaaatactacccaactgct
gaggaggtctatggcgaagaagttgaaaccttagttatggatgaagatgagcagccactt
gaacagcctattattaagcctgtgcgaaatctcaagtttgagttgggggttaaggactca
actacctatgtatcaacacagttccttttgggtctcatgtcaaaccctatgctggtgagg
aatgttgctttagtaggccacctgcactgtgggaagacgactttcatggacatgttggtc
gagcagacgcatcacatatcaacctttgatcagaacagcgagaaacatatgcgatatact
gatacgagaattgatgagcaggagaggaggatatccatcaaggcggtgccaatgtcactt
gttctagaggatagcaattcgaaatcatatctttgcaatgttatggatactcctggtcat
gttaacttttctgacgagatgacagctgctctgaggcttgctgatggtgcggtgttaatt
gttgatgctggagaaggagttctggtaaacacagaaagggcaatacgccacgcaatccaa
gaccgcatccccattgtagttgtgataaacaaggttgacagattaataactgagctcaag
ttgcctccaaaggacgcgtaccacaaactaaggcacacaattgaagtcatcaacaaccac
attatggctgcatcttcaactgctggaaatgttcaagttattgatcctgctcttggaaat
gtttgtttcgcaagttccagtgcaggatggtcgtttaccttgcaatcatttgctaagcta
tatgttaaactccacggtgttccatttgatgctaacaaatttgcctcttgcctttggggt
gattattactatgaacctgataccagaagttttaagaagaaaccacctgtaagtggagca
gaacggtcctttgttcagtttgtgcttgaacctctttataaattatatagtcaagtgatt
ggagaacataaaaagagtgtagaggctacactctctgaactcggagtgactttgagtaat
gcagcttatcgcttgaatgttaggccactgttaagattggcgtgtagctctgtttttggt
agtgccacagggtttacagacatgctggttcaacacatcccatctgcaaaagatgctgca
cagcggaaggttgagcacatctatactggtcctaaggactccccaatttatgaggccatg
gaaaactgtgatgcatcgggtcctctaatggttaatattaccaaactgtatccaaaatca
gattgcagcgtctttgatgccttcggcagggtctacagtggagaaattatggctggccag
acggtacgtgtactgggagaagggtattctcccgatgatgaagaagacatgacagtgaaa
gaagtgaccaaattatgggtctaccaagctcgttataggattcctattagcaaagcccct
cctggttcttgggttttaattgaaggtgtggatgcttccattatgaagactgccacactt
tgcaacttggaatataatgaagacgtgtatatatttagaccccttcagttcaacactctt
cctgtggtgaaaactgctacagagccattgaatccaagtgagctgcctaaaatggtggag
ggtcttaggaagatcagcaaaagctacccattagctatcacaaaggttgaagaatctggg
gagcatacaattttgggcactggagagttgtacttggattccataatgaaggacctcagg
gagctttattcagaagtggaagtaaaggtggcagatcccgtcgtctcattttgtgaaaca
gttgtggaatcctcttcaatgaaatgctttgctgaaactccaaacaaaaaaaataaaatt
acaatgattgctgagccactggagagaggacttgcagaggacattgaaaatggcactgta
agcattgactggccaaggaaaaagcttggcgacttcttccagacaaagtatgactgggat
ttgctagctgcgcggtctatttgggcatttggtcctgagaagcaggggcctaatattttg
ttggatgatacactgtctagtgaagttgacaagagtttgcttagtgcagttaaagattct
attgtgcaagggtttcagtggggagctcgagaaggccctctatgcgacgagccaatcaga
aatgttaaatttaaaatagtggatgccaagattgctcctgagccactgaaccgtcaatcc
ggccaaatcattccaactgctcgacgcgtggcttattcggctttccttatggctacacct
aggctcatggaaccagtgtattatgtggagatacaaactccaatagactgtgtttctgca
atatacacagttttatcgcgtaggcgtggtcacgtcactgctgacgttccacagccaggg
accccagcctacattgttaaggcatttttaccggtgatagagtcgtttggatttgagaca
gacttgaggtatcatactcaagggcaggcattttgcgtatccgtatttgatcactgggct
atcgtccctggagatccgttggataaaagtatagttctacgtccgttggagccagccccg
attcaacatttagctcgtgaatttatggtgaagacgaggcgccgcaagggaatgtcggaa
gatgtgagcattaataaattcttcgatgaggctatggttgttgaactggctcagcaggct
gccgatcttcatcaacaaatgatctga
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