Salvia hispanica (chia): 125219462
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Entry
125219462 CDS
T09851
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
shis
Salvia hispanica (chia)
Pathway
shis03018
RNA degradation
shis03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125219462
09123 Folding, sorting and degradation
03018 RNA degradation
125219462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125219462
03041 Spliceosome [BR:
shis03041
]
125219462
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125219462
mRNA degradation factors
5'-3' decay
Lsm complex
125219462
Spliceosome [BR:
shis03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
125219462
Complex C
U2 snRNP components
125219462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
U6-snRNA_bdg
Motif
Other DBs
NCBI-GeneID:
125219462
NCBI-ProteinID:
XP_047977398
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All DBs
Position
4:complement(12790740..12792595)
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AA seq
97 aa
AA seq
DB search
MGSEEESAVKEPLDLIRLSLDERIYVKLRHDRELRGRLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggggagcgaagaggagagcgccgtgaaggagcctttggacctcattcgtctcagcctc
gacgagcgcatctacgtcaagctccgccacgaccgtgagcttcgtggaaggctccatgct
tatgaccagcatttgaacatgattctgggtgatgttgaagagattgttaccacagtggag
attgatgatgaaacatatgaggaaattgtcaggaccacaagacgtacagtaccgttctta
tttgtgagaggagatggtgtcattttggtctcacctccacttagaacagcttga
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