Salvia hispanica (chia): 125221750
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Entry
125221750 CDS
T09851
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
125221750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125221750
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125221750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
125221750
NCBI-ProteinID:
XP_047979933
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All DBs
Position
4:complement(35056669..35067752)
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AA seq
1001 aa
AA seq
DB search
MGVPAFYRWLADRYPLCIVDVVEEEPGQDERGVPRPVDVSRPNPNGIEFDNLYLDMNGII
HPCFHPEGKPAPTTYADVFKSIFDYIDHVVSLVRPRKLLYLAIDGVAPRAKMNQQRSRRF
RAAKDAAAAEAEEEKMRKEFELEGEKLLPKGKTETSDSNVITPGTPFMAVLSVALQYYVQ
SRLNRNPGWHFLKVILSDANVPGEGEHKIMSYIRLQRNIPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITLPGQQEKCFLCGQAGHLAAECRGGANGDNVDDTPVHKKKYQFL
NIWVLREYLGYELNIPNPPFEIDFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLM
VVYKREFAAMGGYLTDAALHLLLGQCCHLPSLTQCTPPPTSFSVFLDRVETFVQAVAVHE
DQIFKKRSRIQQAYENNEEMKQRARGQASQIPNSSAGDKVKLGEPGYKERYYSEKFGTSD
PQKIDEIRTDVVLKFVEGLCWVCRYYYQGVCSWQWYYPYHYAPFASDLKGLADLEITFFP
GEPFKPFDQLLGTLPAASSTALPERYRTLMTDPASPIVDFYPNDFEIDMNGKRFAWQGVA
KLPFIDEKKLLAETKKLEETLTEEEQFRNSVMFDLLYVHPRHPLAAQITIYYRLSGIEKS
PWPIDAVASAGMNGFLWLTKRNGLKEVIPSPVYGLEDITNNQAINITYLNPAPHAHIPKP
PAGVNMPVKIVKSFDIKPAPVLWHEDNGGRHHLGKERPQVSGAISGPILGEAAHRLVHNT
LNIKSDRMNSRNFHGNQVANRMRPAGPPGYEMGVSEIQNSQNRHASYRPRAVGPSGYGRY
GNNEQGYYNNPNSFSVQHSPHAPMGSARYSGPPDNLQINRPIYNAQDRYSYQEQHHVLRG
GMSALTIDGGSSKGRSLAGTSSRPSNSVQISQTSAQLPQQRGPLPSPPPKWISKRPAEAT
EMYYKQQSSVAAGQGGPVKLASRYQVKNKTVQNGVDPRLQQ
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcctgctttttaccggtggctggcggatcggtacccgctgtgtattgtggat
gtggtggaggaagaacctgggcaggacgagaggggcgtgccccgccctgtcgatgtatcg
aggccaaaccctaatggcattgagttcgataatttgtatttagatatgaatggtattatt
catccttgtttccaccccgaaggcaagcctgcacctaccacatatgcagatgtatttaaa
tctatctttgattacattgaccatgtcgtgtcattggttcgtccaagaaagctcctttat
ttggcaattgatggtgtggctcccagggctaaaatgaaccagcaaaggtctcgtcgtttc
agggctgctaaggatgctgcagcagctgaagctgaagaagaaaaaatgaggaaagagttt
gaacttgagggggaaaaactattgccaaaaggaaagactgaaacatctgattcaaatgtt
atcacccctggcaccccatttatggcagtgctctctgtagcacttcaatattatgtgcag
tcaagattgaaccgcaatcccggatggcactttctcaaggttattctttctgacgcaaat
gttcctggtgagggtgagcacaaaattatgtcttatattcgtttacaacgcaatattcct
ggttttgatccaaacaccaggcattgtctatatggcttggatgctgacctgatcatgctc
tcactagctactcatgaagttcacttttcaatactgagagaggtgattactcttcctggg
caacaggaaaaatgctttctctgtggccaagcaggccatctggcagctgaatgtcgtggg
ggagccaacggtgataatgtagatgacactcccgttcataagaagaagtatcagtttctc
aacatctgggttttgcgagaatacttgggatatgagctgaatattccaaatcctccattt
gaaattgatttcgagagactggtggatgattttgtgtttctatgcttttttgtcggcaat
gactttcttcctcatatgcccacgttggaaattagagagggtgccataaatttgctcatg
gttgtatataaaagggaattcgctgcaatgggcggttatcttacagatgctgctctccac
ctgctactgggtcaatgctgccacctgccctctctgacccaatgtacaccaccacctact
tctttttctgttttcttggaccgggttgaaacttttgttcaggcagttgcggtgcatgaa
gatcaaatttttaaaaaaagaagccgtatacagcaggcatatgagaataatgaagagatg
aagcaaagagcaagggggcaggctagtcaaattcctaattcttcagcaggggataaggtg
aagttaggggaacctggatataaagaaaggtattattctgagaaatttggtacatctgat
ccgcagaagatagatgaaatacgaacagatgtggttttgaagtttgtggaagggctgtgt
tgggtttgccgctattattaccaaggtgtctgctcatggcagtggtactatccataccat
tatgctccatttgcatctgatcttaaaggcttagctgatttagaaatcactttcttccca
ggggagccatttaaaccctttgatcagttattgggaaccctaccagctgcaagttctact
gctctccctgaaagatacagaacgttgatgactgatcctgcatcacctattgttgatttc
tatccaaatgattttgaaatcgacatgaacggaaaacgctttgcttggcagggtgttgcc
aaattaccattcattgatgagaagaaattgcttgctgagaccaagaagctcgaggaaact
ttaacggaggaagagcagtttcggaatagtgtcatgttcgatttgttgtatgttcatcct
cgtcaccctttggcagctcagataaccatatactatcgtctttctggcattgaaaaatcc
ccatggcctattgatgcagttgcgagtgctggaatgaacggatttttgtggttaactaaa
agaaatggcttgaaagaggttatcccttcacctgtctacggtttggaagatatcacaaac
aatcaagccataaatatcacatatcttaatccagcacctcatgctcacattccgaaaccc
cctgcaggtgttaatatgccagtaaagatagtgaaatcttttgacataaaaccagcccca
gtattatggcatgaagataacggtggaaggcaccatctagggaaagaaagaccacaggtt
tctggggcaatatctggtcctattttaggagaagctgctcatcgtctggttcacaatacg
ttgaacattaagtcggatcgtatgaattctcgcaattttcatgggaatcaggttgccaac
aggatgaggccagctggaccacctgggtatgaaatgggagtttcagagatccaaaattct
cagaatcgccatgcatcttataggccaagagcagtcgggccttctgggtacggtcgatat
ggtaacaacgaacagggatattataacaacccaaactcttttagtgtccaacacagccct
cacgctccgatgggaagtgctcgatatagtggccccccagataatttgcaaatcaacagg
ccgatttacaacgctcaagatagatattcatatcaggaacagcatcatgttctgagaggc
ggcatgtctgcattaactattgatggtggttcttccaaaggcaggtcacttgctggaact
tcttcaagaccgtcaaattctgttcagatatcacagacctctgctcaactcccgcagcag
agaggtccgcttccatcaccgcctcctaaatggatcagtaaacgtccagccgaggctaca
gaaatgtactataagcaacagagttcagtagcagcagggcaagggggaccagtgaagctg
gctagccgctatcaggtcaaaaataagacggtgcagaacggcgttgatccacgactccag
cagtga
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