Salvia hispanica (chia): 125223541
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Entry
125223541 CDS
T09851
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
shis
Salvia hispanica (chia)
Pathway
shis04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
125223541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shis03019
]
125223541
Messenger RNA biogenesis [BR:
shis03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125223541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Svs_4_5_6
DUF2316
Motif
Other DBs
NCBI-GeneID:
125223541
NCBI-ProteinID:
XP_047982690
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Position
4:complement(25756743..25764134)
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AA seq
793 aa
AA seq
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MGIPAFYRWLIERFPRSVVDVLEDSSPVVNGVRLPVDITRSNPNGVEFDNLYLDMNGIIH
PCFHPENGSPPKSYDEVFAAVFKYIDRIFALVRPRKLLFMAIDGVAPRAKMNQQRARRFR
AAKDAADMASLLEKQGSDHEEKDKPAESGVLDSNLITPGTGFMESLSSALQYYVHLRINN
DPGWKGVKVILSDATVPGEGEHKVMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATH
EVHFSVLREDVRRPPPDSKDHKAHNMKKAAGKTYLEPKEVPSQYLEDIISKQKFQFLNVW
VLRDYLAESLRVPDPTVKFDLERLIDDFVFMCLFVGNDFLPHVPSLEISEGAIDLLMSVY
KKEFVRMGGYLTNATEVNLKGVEHFVQTLGSHENAIFKKRQQEQLNWEHRARRFPAKSNL
QSDATFVADKVNLGEDGWKERYYTEKFEAQSDDDRETVKKDAVLKYVEGICWVMHYYYQG
VCSWQWFYPYHYAPFGSDFRDLDQLDIHFELGKPFKPFDQLMGVLPAASAGALPLCYRKL
MTDQASPILDLYPTEFDLDLNGRKQAWKAICKLPFIDEARLLSEIAKVENTLTDVERRRN
TLGVDQLFINISHPLAAKILTFWERNKDHPKLQRAKVRTLINPRFSDGMNGYVYISDKPI
CPPEIPSPLHDMKTITPNKVLLVFYKLPDLHPHIPRPPEGVRMPKKVIGKHDLLPPPTLW
HQSAVSQSRFSTRPVPPKSIAGSSLAEICHSLVAKTYSSEDRGNAMKRSHDAAMNHSGKK
RKRRGGKSKKRNA
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggggattccggcgttttaccggtggctgatcgagagatttccgcggtcagttgttgac
gtgctggaggattcgtcgccggtagttaacggagttaggttgcccgtcgacatcacgagg
tcgaaccctaacggagtggagttcgacaatctgtatctcgacatgaacggcattatacat
ccgtgttttcaccctgaaaacgggtctcctccgaaatcttacgatgaagtgtttgccgca
gttttcaagtatattgatcggattttcgcactggttaggcctcgcaagcttctgttcatg
gccattgatggtgttgccccgagggctaagatgaatcagcagcgagcaagacgtttcaga
gcagctaaagatgcagctgatatggcttctctattagagaaacaaggaagcgaccatgag
gagaaagataaaccggcagaaagtggagtgctcgattctaacttaatcactccggggact
ggattcatggaatcactttcatccgcacttcaatattatgtacatttaaggatcaacaac
gatcctggttggaagggagtcaaggtaatcctttctgatgctactgtacctggtgaagga
gaacataaagtgatgtcttatatccgcttgcaaagaaatctgcctggatttgatccaaac
acacggcattgtttgtatggtttggatgcagatcttatcatgcttgctttggctacccat
gaagttcatttctcagttttaagggaggatgtccgaagaccgccccctgatagcaaagat
cacaaggctcacaacatgaagaaggcagctggaaagacctatttggagcccaaggaagtt
ccttcacaatatcttgaagacatcatatcaaaacagaagtttcagtttctcaatgtatgg
gtactccgggactatttggcggagagcctgagagtaccagatccaacagtaaaattcgat
cttgaaagattgatagatgattttgttttcatgtgcctttttgttggaaatgactttcta
ccccatgtgccatcattggagatatcagagggggctatcgatttgcttatgtctgtttac
aaaaaagaatttgtccgaatgggtggctatctcactaatgctactgaggtaaatttgaaa
ggagtggaacactttgttcagacacttggttctcatgagaatgcaattttcaagaaacga
cagcaggaacagttgaactgggagcatcgcgcaagacgttttcctgccaaatccaatttg
caatctgatgccacatttgtggcagacaaggtaaatctaggagaggacggttggaaagag
agatactacaccgagaagtttgaggcacaaagtgatgatgaccgtgagacagttaaaaaa
gatgctgtcttgaaatatgttgaggggatatgctgggtcatgcattattactaccaagga
gtatgctcatggcaatggttttatccataccattacgctcccttcggatctgatttccga
gacctagaccagctcgatattcactttgaactcgggaaaccctttaaaccattcgaccaa
ttaatgggtgtcctgcctgctgcaagtgcaggagcgcttcctttatgctataggaagtta
atgacagatcaagcatcccctatcctggatctctatcccacggagtttgatctggatttg
aatgggagaaaacaagcatggaaggctatttgtaaattaccctttattgacgaggctcgt
cttcttagtgagattgcaaaagtagaaaatacattaacggatgtggagaggcggcgaaac
actctgggcgttgatcaactatttattaacatttcacatcctttagcggccaaaatattg
actttctgggaacggaataaagatcatccgaagctgcagagagctaaagtgaggacgcta
attaacccaagattcagtgatggaatgaatgggtacgtgtacatatccgacaagcccatt
tgccctccagagatcccatctcctttacatgacatgaagacaatcacgccgaataaagtc
ttgctggtcttttataaacttcccgatcttcatcctcacatccctagaccaccagaagga
gttagaatgcctaaaaaggttattggcaagcacgatttgctacctccacctacgctgtgg
catcagtcggctgtttctcagagcagattttccacccggcctgttcctccaaagtcgatt
gcaggatcgtctcttgcagaaatctgccacagtctcgttgctaaaacttacagcagcgaa
gaccgaggaaatgccatgaaacgaagccatgatgctgctatgaatcatagtggaaagaaa
cgcaagaggcgtggtggaaagtcaaaaaaacgcaacgcctag
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