Streptomyces huasconensis: J2N69_26175
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Entry
J2N69_26175 CDS
T07920
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shk
Streptomyces huasconensis
Pathway
shk03030
DNA replication
shk03410
Base excision repair
shk03420
Nucleotide excision repair
shk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J2N69_26175 (ligA)
03410 Base excision repair
J2N69_26175 (ligA)
03420 Nucleotide excision repair
J2N69_26175 (ligA)
03430 Mismatch repair
J2N69_26175 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shk03032
]
J2N69_26175 (ligA)
03400 DNA repair and recombination proteins [BR:
shk03400
]
J2N69_26175 (ligA)
Enzymes [BR:
shk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J2N69_26175 (ligA)
DNA replication proteins [BR:
shk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J2N69_26175 (ligA)
DNA repair and recombination proteins [BR:
shk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J2N69_26175 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J2N69_26175 (ligA)
MMR (mismatch excision repair)
DNA ligase
J2N69_26175 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J2N69_26175 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
Motif
Other DBs
NCBI-ProteinID:
UFQ18203
LinkDB
All DBs
Position
5722839..5725022
Genome browser
AA seq
727 aa
AA seq
DB search
MAVEQQGSVPAEARDHHAQLAEQIEEHRFRYYVKDQPVVSDAEFDKLLRSLEALEEEYPE
LRTPDSPTQKVSGSYETEFTAVEHRERMLSLDNAFDDAELAAWADRVAKDVGSPGYHFLC
ELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPQRLKGERVPALVEIRG
EVFFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGAREG
FDIDCLSHAYELLRAWGLPTAKHNKVVDGIEGVRDFIAYFGENRHSVEHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQDVVKKKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGTEREFVMPAECPECGT
GLRPMKEGDIDLRCPNAQTCPAQLRERLFYLAGRRSLDIENFGYVAAAALTRPLEPAEPP
ILDEGDIFDLKVEELLPIKSYVLDQDSGLPKRDPKTGEEKVVTFFANQKGEAKKNTLAML
ENIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSIDRIDQATEVELATTEGVGPVIA
ASLKQWFAEEWHREILRKWRAAGVRMEEESSGEDEGPRPLEGLTVVVTGTLEHYTRDGAK
EALQTRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQVKVPVLNEEGFVVLLEQGPDAARE
VALPTEE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggctgtcgaacagcaaggctctgtgcccgccgaggcacgggatcaccatgcccagctg
gccgaacagatcgaggagcaccgcttccggtactacgtgaaggaccagcccgtcgtcagc
gacgccgagttcgacaagctcctgcgttccctcgaagccctggaggaggagtatccggag
ctgcggacgccggactcgcccacccagaaggtctccggttcgtacgagacggagttcacg
gcggtcgagcaccgcgagcgcatgctctcgctggacaacgccttcgacgacgccgagctg
gccgcctgggccgaccgcgtggccaaggacgtcggttcgccggggtatcacttcctgtgc
gagctgaaggtcgacggcctcgcggtcaacctcacctacgagcacggcaggctgacccgc
gccgccacccggggcgacggccgcaccggcgaggacatcacgccgaacgtccgcacgatc
gccgaaatcccgcagcgcctcaagggcgagcgggtccccgccctcgtggagatccgcggc
gaggtcttcttcccgatggagaagttcgaggagctgaacgcccgcctggtcgaggcgggc
gacaagcccttcgccaacccgcgcaacgcggcggcgggatcgctgcgccagaaggacccg
cgcgtcaccgcgacccgcccgctgcacatggtcgtgcacggcatcggcgcccgcgagggc
ttcgacatcgactgcctcagccacgcctatgaactgctgcgcgcatggggcctgcccacc
gccaagcacaacaaggtcgtcgacggcatcgaaggcgtgcgggacttcatcgcgtacttc
ggcgagaaccgccactccgtggagcacgagatcgacggcgtcgtcgtcaagctcgacgag
atcccgctccagggccgcctcggctccacctcgcgcgccccccgctgggcgatcgcctgg
aagtacgcgcccgaggaggtcaacaccaagctcatcaatatccgcgtgggcgtcggccgc
accggccgcgtcacgccgtacgcccaggtggagcccgtcaccgtcgccggttccgaggtc
gagttcgcgaccctgcacaaccaggacgtggtgaagaagaagggcgtcctgatcggcgac
accgtcgtcatccgcaaggccggtgacgtcatcccggagatcctcggccccgtcgtcgac
ctgcgggacggcaccgagcgggagttcgtgatgcccgccgagtgccccgagtgcggcacg
gggctgcggcccatgaaggagggcgacatcgacctccgctgccccaacgcccagacgtgc
ccggcccagttgcgtgaacgtctcttctacctcgccggccgccggtccctggacatcgag
aacttcggctatgtggcggccgccgcgctgaccagacccctggagcccgccgagccgccc
atcctcgacgagggcgacatcttcgacctcaaggtcgaggaactgctccccatcaagtcc
tatgtcctcgaccaggattccggcctgcccaagcgcgaccccaagaccggcgaggagaag
gtggtcaccttcttcgccaaccagaagggcgaggcgaagaagaacaccctcgccatgctg
gagaacatcgcggcggccaaggagcgcccgctcgcccgcgtcctgaccggcctctcgatc
cggcacgtcggcccggtggccgcagaggcgctggcccgcgagttccgctccatcgaccgc
atcgatcaggccaccgaggtggagctggccacgacggagggagtgggcccggtcatcgcg
gcctccctcaaacagtggttcgccgaggagtggcaccgcgagatcctccgcaagtggcgg
gcggccggggtgcgcatggaggaggagtcgagcggcgaggacgagggcccgcgccccctg
gaggggctcacggtcgtcgtgaccggaacactggagcactacacccgggatggcgcgaaa
gaggcgctccagacccggggcgcgaaggtgaccggttccgtttcgaagaagacgtctttc
gtcgtcgtgggggacaaccccggttcgaagtacgacaaggcgatgcaggtgaaggttccg
gttctcaacgaggaaggcttcgtcgtgctgctggaacaaggaccggacgcggcgcgggaa
gtcgcgcttccgaccgaggagtag
DBGET
integrated database retrieval system
