Shewanella sp. MR-7: Shewmr7_1575 Help Entry Shewmr7_1575      CDS       T00389                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism shm  Shewanella sp. MR-7 Pathway shm03030   DNA replication shm03410   Base excision repair shm03420   Nucleotide excision repair shm03430   Mismatch repair Brite KEGG Orthology (KO) [BR:shm00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Shewmr7_1575    03410 Base excision repair     Shewmr7_1575    03420 Nucleotide excision repair     Shewmr7_1575    03430 Mismatch repair     Shewmr7_1575  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:shm03032]     Shewmr7_1575    03400 DNA repair and recombination proteins [BR:shm03400]     Shewmr7_1575 Enzymes [BR:shm01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Shewmr7_1575 DNA replication proteins [BR:shm03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Shewmr7_1575 DNA repair and recombination proteins [BR:shm03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Shewmr7_1575    NER (nucleotide excision repair)     GGR (global genome repair) factors      Shewmr7_1575    MMR (mismatch excision repair)     DNA ligase      Shewmr7_1575   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Shewmr7_1575 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH 5_3_exonuc Motif Other DBs NCBI-ProteinID:  ABI42573 UniProt:  Q0HWD2 LinkDB All DBs Position 1844918..1846990 Genome browser AA seq 690 aa AA seqDB search MNMQDIQLDKRLSELLSQAVTPQNAQPLMQALCQSLNEHNIRYYVDDAPSITDSEYDRLM QRLKQLEAEYPQFVAADSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVS DRVGEVSFCCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGD NYPELVEVRGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSF YAYALGVVEPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADL PFEIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPV ARLKPVFVGGVTVSNATLHNADEIERLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAK AIAFPQHCPVCGSLVERLEGEAVTRCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVE QLIDKELVQSPADLFKLTASMMTMLDRMGMKSATNLAQAIEAAKTTTLPRFLYALGIREV GEATAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFFAQPHNLEVIDALITAG VNWPTIAAPSADEQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAG EAAGSKLAKAQELGVKVIGEDELLALLANS NT seq 2073 nt NT seq  +upstreamnt  +downstreamnt atgaatatgcaagacattcaactcgataaacgcctatctgaactgctttctcaagctgtc acgccacaaaacgcgcagccattgatgcaggcgctctgccaatctctgaatgaacacaat attcgttattatgtcgatgatgcgccaagcattaccgactccgaatacgacagattaatg cagcggctgaaacagcttgaggccgagtatcctcagtttgttgctgccgactcacccacc caaagagtgggcggcatggcgctggcaaagtttgaacaaatcactcatcttaagcctatg ttaagtctcgataatgccttcgatgaggcagactttagcgcgtttcataaacgtgtcagc gacagagttggtgaagtgagtttttgttgtgagcctaagctcgatggtctagcggtgagt attttgtatcgcaatggtgtgcttgagcgcgccgcgacccgtggcgatggcactgtgggt gaggatattactgaaaacgttaaaaccattaagtcgattccgctcaaactgcgcggtgac aactatcccgaattggtcgaagtgcgcggcgaagcctttatgcccaaggcggcatttgag gcgctaaatgagcgtgcgcgcttaaaggatgaaaagctgtttgtgaatccgcgtaatgcg gcggcgggcagcttacgtcagctcgacagtaaaattaccgcgtcacgggcgctgtctttt tatgcctacgccttaggtgtggtggagccgacttcccatgagctagctaagacgcattat gagcaattgcagcaacttaaatcttgggggctaccagtcagtagcgagatcaaagtctgt gacgaactcagccaagtatttgcctactatcaagatatattgactcgccgcgccgactta ccctttgagatcgatggcgtggtgatgaaggtgaacgatatcgcccagcagcaaacctta gggtttgtggctaaatcaccccgttgggcgattgcctataagttccccgctcaggaagaa atgaccctgctcgaaggcgtagattttcaagtgggccgcactggcgcggtgactccagtc gcgcgcctaaaacctgtgtttgtcggcggcgtgaccgtatcgaacgcgactttgcacaat gccgatgaaatcgagcgtttaggtgtgatggtgggcgatactgtgattatccgccgtgcc ggcgatgtgatcccgcaaattgtggccatagtgcctgagcgtcgcccagaagatgcgaag gcgattgccttcccgcaacattgccccgtttgcggtagtttggttgagcgattagaaggt gaggccgtgacccgttgtagcggcggcttattctgtgaggcccagcgtaaagaggcgatc aagcattttgcctcccgcaaggcattagatatcgacggcatgggcgataaaattgtcgag cagttgattgataaggagctggtgcaaagcccggctgacttatttaaactcaccgcctct atgatgaccatgctcgaccgtatgggaatgaagtcggccaccaatctcgcgcaggcgatt gaagcggctaaaaccacgactttgcctcgtttcctctatgccttaggcattcgtgaggtg ggggaggccacggcggcgaaccttgcgactcactttggtagcctagaggcactgcgcgtg gccaccattgagcaacttattcaagttgaagatattggtgaagtggttgcccagcacgtg gcgcatttctttgcccagccccataacctagaggtgatcgatgctttgattacggcgggc gtcaactggcctacgattgcagcgccaagcgccgatgagcagccgttgaaggggcagact tgggtgttaacagggaccttaaatcaactcaaccgtaacgatgctaaggcgcagttacag gccttaggcgccaaagtagcgggcagtgtgtcgaaaaataccgattgcttagtcgcgggc gaagcggcggggtctaagcttgctaaagcgcaggagcttggtgtgaaagtgattggcgaa gatgaattgttggccttactggcaaatagctaa

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