Shewanella sp. ANA-3: Shewana3_1569
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Entry
Shewana3_1569 CDS
T00428
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03030
DNA replication
shn03410
Base excision repair
shn03420
Nucleotide excision repair
shn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shewana3_1569
03410 Base excision repair
Shewana3_1569
03420 Nucleotide excision repair
Shewana3_1569
03430 Mismatch repair
Shewana3_1569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shn03032
]
Shewana3_1569
03400 DNA repair and recombination proteins [BR:
shn03400
]
Shewana3_1569
Enzymes [BR:
shn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Shewana3_1569
DNA replication proteins [BR:
shn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Shewana3_1569
DNA repair and recombination proteins [BR:
shn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Shewana3_1569
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shewana3_1569
MMR (mismatch excision repair)
DNA ligase
Shewana3_1569
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Shewana3_1569
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABK47803
UniProt:
A0KVI4
LinkDB
All DBs
Position
1:1835787..1837862
Genome browser
AA seq
691 aa
AA seq
DB search
MNMQDIQLDKRLSELLSQAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLM
QRLKQLEAEYPQFVAADSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVS
DRVGEVSFCCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGD
NYPELVEVRGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSF
YAYALGVVEPTSHELAKTHYEQLQQLKSWGLPVSSEIKVCDELSQVFAYYQDILTRRADL
PFEIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPV
ARLKPVFVGGVTVSNATLHNADEIARLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDAK
AIAFPQHCPVCGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVE
QLIDKELVQSPADLFKLTASMMTMLDRMGIKSATNLALAIEAAKTTTLPRFLYALGIREV
GETTAANLATHFGSLEALRVATIEQLIQVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAG
VNWPAIAAPSADEQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAG
EAAGSKLAKAQELGVKVIGEDELLALLAANS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgcaagacattcaactcgataaacgcctatctgaactgctttctcaagctgtc
acgccacacaatgcgcagccaataatgcaggcgctctgccaatctctgaatgaacacaat
attcgttactatgtcgatgatgcgccaagcattaccgactccgaatacgacagattaatg
cagcgtctgaaacagcttgaggccgagtatcctcagtttgttgctgccgactcgcccacc
caaagagtgggcggtatggcactggccaagtttgagcaaatcactcaccttaaacctatg
ttaagtctcgataatgccttcgatgaggcagactttagcgcgtttcataaacgtgtcagc
gacagagttggcgaagtgagtttttgttgtgagccgaaactcgatggtttggcggtgagt
attttgtatcgcaatggtgtgcttgagcgcgctgcgactcggggtgatggtaccgtgggc
gaagatattaccgaaaacgttaaaaccattaagtcgattccgctcaaactgcgcggtgac
aactatcccgaattggtcgaagtgcgcggcgaagcctttatgcccaaggcggcgtttgag
gcgctaaatgagcgtgcacgcttaaaggatgaaaaactgttcgtcaatccgcgtaatgcg
gcggcgggcagcttacgtcagctcgacagtaaaattaccgcgtcacgggcgctgtctttt
tatgcctatgccttaggcgtggtggagccgacttcccatgagctagctaagacgcactac
gagcaattgcagcaactaaaatcttgggggctgccagtcagcagcgagatcaaagtctgc
gacgaactcagccaagtctttgcctactatcaagatatattgactcgccgcgccgactta
ccctttgagatcgatggcgtggtgatgaaggtgaacgatatcgcccagcagcaaacttta
gggtttgtggccaaatctccccgttgggcgattgcctataagttccccgcacaggaagaa
atgaccctgctcgaaggcgtagattttcaggtcggccgcactggcgcagtgactccagtc
gcgcgcttaaaacctgtgtttgtcggcggcgtgacggtatcgaacgccaccttacacaat
gccgatgaaatcgctcgtttaggtgtaatggtgggtgatactgtgattatccgccgcgcc
ggtgatgtgatcccgcaaattgtcgccatagtgcccgagcgtcgcccagaagatgctaag
gcgattgccttcccgcaacattgccccgtttgcggcagtttggttgagcgattagaaggt
gaagccgtggcccgttgtagcggcggcttattctgtgaggcgcagcgtaaagaggcgatc
aagcattttgcctcccgcaaggcattagatatcgacggcatgggcgataaaattgtcgag
cagttgattgataaggagctggttcaaagcccggcggacttatttaaactcaccgcctcg
atgatgaccatgctcgaccgtatgggaattaagtcggccaccaatcttgcgctggcgatt
gaagcggctaaaaccaccaccttgccacgtttcctttatgccttaggcattcgagaggtg
ggggagaccacggcggcgaacctggcgactcactttggcagcctagaggcgctgcgtgta
gctactattgagcaacttattcaagttgaagatattggtgaagtggttgcccagcatgtg
gcgcatttctttgcccagccccataacctagaggtgatcgatgccttgattgcggctggc
gtcaactggcctgcgattgcagcaccaagcgccgatgagcagccgttgaaggggcagact
tgggtgctaaccggcaccttaaatcaactcaaccgtaacgatgctaaggcgcaactacag
gccttaggcgccaaagtggcgggcagtgtatcgaaaaataccgattgcttagttgcgggt
gaagcggcgggttctaagcttgccaaagcgcaggagcttggcgtgaaagtgattggtgaa
gatgagttgttggctcttctagcagcaaatagctaa
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