Streptomyces hygroscopicus subsp. jinggangensis TL01: SHJGH_6346
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Entry
SHJGH_6346 CDS
T02531
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sho
Streptomyces hygroscopicus subsp. jinggangensis TL01
Pathway
sho03030
DNA replication
sho03410
Base excision repair
sho03420
Nucleotide excision repair
sho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHJGH_6346
03410 Base excision repair
SHJGH_6346
03420 Nucleotide excision repair
SHJGH_6346
03430 Mismatch repair
SHJGH_6346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sho03032
]
SHJGH_6346
03400 DNA repair and recombination proteins [BR:
sho03400
]
SHJGH_6346
Enzymes [BR:
sho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SHJGH_6346
DNA replication proteins [BR:
sho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHJGH_6346
DNA repair and recombination proteins [BR:
sho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SHJGH_6346
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHJGH_6346
MMR (mismatch excision repair)
DNA ligase
SHJGH_6346
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHJGH_6346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AGF66009
LinkDB
All DBs
Position
7187458..7189653
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTAVPAEARDQHAQLAEQVEEHRFRYYVKDAPVISDAEFDQLLKSLEALEER
YPELRTPDSPTQKVSGSYETEFTAVEHRERMLSLDNTFNDDELAAWADRVARELGDQTYH
FLCELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LAGFTGMTRLSQAYDLLKTWGLPTSPHNRVVDDLAGVREFIAYYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVKVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPSECP
ECGTPLRPMKEGDIDLRCPNARTCPAQLRERVSYLAGRECLDIEHFGAVAAAALTRPLEP
ADPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKHDPKTGEEKVVTVFANQKGEPKKNT
LALLANIEAAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATEEELAATDGVG
PIIAAALKEWFAEDWHREILRKWKAAGVPLEEESSGEEEGPRPLEGLTVVVTGTLENHTR
DGAKEALQRQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFGVLLEQGPE
AAAEVALPTGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggagacgacggcggtgcccgccgaggcccgcgaccagcac
gcgcagctggcggagcaggtcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcatcagcgacgcggagttcgaccagctcctcaagtcgttggaggccctggaggagcgg
tacccggagctgcgcaccccggactcgccgacccagaaggtctcggggtcgtacgagacg
gagttcacggcggtcgagcaccgcgagcgaatgctctcgctcgacaacacgttcaacgac
gacgagctggccgcctgggccgaccgtgtcgccagggagctgggcgaccagacgtaccac
ttcctgtgcgagctgaaggtggacggcctcgcggtcaacctcacctacgagaagggccgc
ctcacgcgcgcggccacccgcggcgacggccgcaccggtgaggacatcacgccgaacgtc
cggacgatcgcggagatcccggaccgcctggcgggcgacaaggtgcccgacctggtggag
atccgcggcgaggtctacttcccgatggagaagttcctcgaactgaacgaacgcctggtc
gcggccggcgacaagcccttcgccaacccccgcaacgccgccgccggttcgctgcgccag
aaggacccgcgggtcaccgcgacccgcccgctgcacatggtcgtccacggcatcggcgcc
ctggcgggcttcaccggcatgacccggctctcgcaggcgtacgacctgctcaagacctgg
ggcctgcccacctccccgcacaaccgcgtggtcgacgacctcgccggcgtacgggagttc
atcgcgtactacggcgagaaccgccactccgtcgagcacgagatcgacggagtcgtggtc
aagctggacgagatccgcctccagggccggctcggctccaccgcgcgggcgccccgctgg
gcgatcgcctacaagtacgcgccggaggaggtcaacaccaagctcgtcgacatcaaggtg
ggcgtcggccgcacgggccgggtcacgccgtacgcgcaggtcgagccggtcaaggtcgcg
ggcagcgaggtggagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtg
ctcatcggcgacaccgtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggc
ccggtggtcgacctgcgggacggcagcgagcgggagttcgtgatgccgagcgagtgcccc
gagtgcgggacgccgctgcggcccatgaaggagggcgacatcgacctccgctgccccaac
gcccgtacctgccccgcccagttgcgcgagcgggtgtcctatctcgccggccgggagtgc
ctggacatcgagcacttcggcgcggtggccgccgccgcgctcacgcgcccgctggagccc
gccgacccgccgctggtggacgagggcgacctgttcgacctgacggtggagaaactgctg
cccatcaaggcctatgtcctcgacccggacagcggtctgcccaagcacgacccgaagacg
ggcgaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacacc
ctcgccctgctggcgaacatcgaggcggccaagtcccgtccgctggcccgcttcctgaac
gggctgtcgatccggcacgtgggaccggtggccgcgcaggccctcgcgcgcgagttccgg
tccatcgaccgcatcgaacaggcgaccgaggaggagctggcggccaccgacggcgtcggc
cccatcatcgccgccgcgctcaaggagtggttcgccgaggactggcaccgcgagatcctc
cgcaaatggaaggccgcgggcgtccccctggaggaggagtcgtccggcgaggaggagggg
ccgcgtccgctggaggggctcacggtcgtcgtcaccggcacgctggagaaccacacccgg
gacggcgcgaaggaggcattgcagcgccagggcgcgaaggtgaccggttcggtgtcgaag
aagacctcattcgtcgttgtgggtgacaaccccggatcgaagtacgacaaggccatgcaa
ctgaaggttcccgtgctgaacgaggacggtttcggagtcctcttggagcagggccccgaa
gcggcggccgaagtcgcgcttccgaccggggagtag
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