Segatella hominis: KUA50_004570
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Entry
KUA50_004570 CDS
T09571
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shoi
Segatella hominis
Pathway
shoi03030
DNA replication
shoi03410
Base excision repair
shoi03420
Nucleotide excision repair
shoi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KUA50_004570 (ligA)
03410 Base excision repair
KUA50_004570 (ligA)
03420 Nucleotide excision repair
KUA50_004570 (ligA)
03430 Mismatch repair
KUA50_004570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shoi03032
]
KUA50_004570 (ligA)
03400 DNA repair and recombination proteins [BR:
shoi03400
]
KUA50_004570 (ligA)
Enzymes [BR:
shoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KUA50_004570 (ligA)
DNA replication proteins [BR:
shoi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KUA50_004570 (ligA)
DNA repair and recombination proteins [BR:
shoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KUA50_004570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KUA50_004570 (ligA)
MMR (mismatch excision repair)
DNA ligase
KUA50_004570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KUA50_004570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
HHH_2
BRCT_2
HHH_5
RUBY_RBDX
Lar_restr_allev
DUF4796_N
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
WOZ82244
LinkDB
All DBs
Position
complement(1132772..1134742)
Genome browser
AA seq
656 aa
AA seq
DB search
MKEEKTTMMKQLVEQLNNASQAYYNGEAELMSDYEWDSKFDQLKLLEDETGIVLPDSPTN
KVSEDSISGKKEPHEFPALSLAKTKSVADLEKWASNKPIWISWKLDGLTLVATYDDGKLT
KIVTRGDGHIGTNITHLAPAIKGVLPKISEKGHLVIRGEAVISYEDFNNFLLETESDYAN
PRNLASGSLTLKDVDEVKLRHIQWIPFTLVYSDQEILSWGQRMDYLEKLGFQTVEHRFIE
NPTSVNIQEKIDEFTQKVTHKKQPFPVDGLVITYDDTQYASTGSVTGHHATRAGYAFKWQ
DEYAETVLDHIEWSCAASTISPVAVFQPVELEGTTVQRASLCNISECERLGIGDAGTKLQ
VIKANKIIPKVIKITEKIGVLNIPDKCPVCGAEAHVVLSESGTKKLHCSNADCTAKQLKK
FARFVSKDGINIDGISEQTVSTFINHGWIRDYADFYHLKDFAYQITSLDGFGKKSVSKLL
ESIEKSRNTDSRHLLYALSIPLCGFDVAKRLLSKYTFKELMETAKTSLFDDVFASIDGIG
PEKSARFVNWFKDDKNYLKVSNLLKELDVKEVEVAEVGTKCAGQTFVITGDVYHYKNRNE
LKAYIESQGGKVTGSVSKSTTYLINNDAESQSSKNKKAHQLGISIITEEQFREKFT
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagaaaaaacgactatgatgaagcagcttgttgaacaactcaacaatgcttct
caagcatattataatggtgaggcagaactgatgtccgactatgagtgggattccaagttc
gaccagctgaaattgttggaagatgaaactggaatagttttaccagattctccaacaaat
aaagtttctgaggattctatttccggcaagaaagaacctcatgaatttcctgccttatca
cttgccaaaaccaaaagtgttgctgaccttgaaaaatgggccagtaacaaaccgatttgg
atttcatggaaacttgatggacttacgttagttgctacttatgatgatgggaaacttacc
aaaatcgtaactcgtggtgatgggcatattggtacgaatattactcatcttgcccctgcc
atcaagggagtattgcctaagatttctgaaaaagggcatttggtaatccgtggagaggct
gtaatttcctatgaggatttcaataattttcttttagagacagaaagtgattatgccaat
ccgcgtaatcttgcgtctggatctctgacgcttaaggatgtggatgaagttaaactccgc
catatccagtggattcctttcactttagtatattccgatcaggaaattctatcatggggg
caaagaatggattatttagaaaagcttggttttcagacggtggaacatcgattcatagaa
aatcctacctctgtgaatattcaggagaaaattgatgagtttacccagaaagttacccat
aagaagcaaccgtttccggtggatggactggttattacttatgatgatacccagtatgct
tctactggttctgttactggtcatcatgcgacaagagccggttatgctttcaaatggcag
gatgaatatgcagagacggttttggatcatatagaatggtcatgtgctgccagtacgatt
tcacctgttgctgtttttcaaccagtagagttggaaggcactaccgttcagcgtgcttcg
ctctgtaatatcagcgaatgtgaacgcttgggtattggagatgcgggtacgaaattacag
gttatcaaggccaataagattattcctaaagtcatcaaaataactgaaaaaattggcgtt
ctgaatattcctgataaatgtcctgtttgtggtgctgaggctcatgtggttttgagtgaa
tcggggactaagaaattacattgcagcaatgctgactgtactgctaaacagttgaagaag
tttgcccgctttgtaagcaaagatggaatcaatatagacggaatttcagaacaaacggtt
tccacttttatcaatcatggatggatcagggattatgctgatttctatcacttgaaagat
tttgcctaccagattacgagtttggatggatttggtaagaaatcggtcagtaagttgttg
gaaagtatcgaaaaaagtcgaaatactgacagcaggcatctgctgtatgctctgagtatt
cctctatgcgggtttgatgttgccaaacgtcttttaagtaaatatacttttaaggaattg
atggaaactgctaagacttcgctttttgatgatgtatttgcaagtatagatggtattgga
cctgaaaaaagtgccaggttcgtaaactggttcaaagatgataaaaactatcttaaggtt
tcaaacctactgaaggaacttgatgtcaaagaggtagaagttgcggaagtgggtacgaaa
tgtgcaggtcagacttttgtgataacaggcgatgtgtatcattataaaaaccgaaacgaa
ctgaaggcttatatagaaagtcaaggtggtaaggtaactggtagtgtgagtaaaagcaca
acataccttataaataatgatgcagagtctcaaagttctaaaaacaagaaggcccatcaa
ctgggcatttccattatcacagaggaacaattcagagaaaaattcacttga
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