Shigella sp. PAMC 28760: A0259_08390
Help
Entry
A0259_08390 CDS
T04390
Symbol
rumB
Name
(GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
shq
Shigella sp. PAMC 28760
Brite
KEGG Orthology (KO) [BR:
shq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shq03009
]
A0259_08390 (rumB)
Enzymes [BR:
shq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
A0259_08390 (rumB)
Ribosome biogenesis [BR:
shq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
A0259_08390 (rumB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Cons_hypoth95
Methyltransf_15
Methyltransf_12
Methyltransf_ANTKMT
Methyltransf_11
Methyltransf_37
Motif
Other DBs
NCBI-ProteinID:
AMR22642
LinkDB
All DBs
Position
1683349..1684476
Genome browser
AA seq
375 aa
AA seq
DB search
MQCALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEWCAPVSGPEQGFRNKAK
MVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFSALKPFIARAGLTPYNVARKRG
ELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQEQLPQLKVITVNIQPVHMAIM
EGETEIYLTEQQALAERFNDVPLWVRPQSFFQTNPAVASQLYATARDWVRQLPVKHMWDL
FCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAAELGLTRLQFQALDSTQFATAQGEV
PELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSCNAQTMAKDVRELPGYRIERVQLFDMF
PHTAHYEVLTLLVKQ
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgcgcactttacgacgcgggtcgctgtcgttcctgtcagtggataacgcagccg
attccagagcaactctccgctaaaaccgccgatcttaaaaatctgctcgccgactttccg
gttgaggaatggtgcgcgccggtgtcaggcccggaacaagggtttcgtaataaagccaaa
atggtggtgagtggtagcgttgaaaaaccactgctcggtatgctgcatcgagacggcaca
ccggaagacctttgtgactgcccgctttatcctgcctcatttgcgcccgttttttcggcg
ctaaaaccgtttatcgcccgagcggggttaacgccctacaacgtggcgcgtaagcgtggc
gaactgaaatacattttgctgactgaaagccagagcgatggcggcatgatgctgcgtttt
gtgttgcgttccgaaaccaaactggcgcaactgcgtaaggcgctaccgtggttacaggaa
caactaccgcagctaaaagttattaccgtcaatattcagccggtacatatggcgattatg
gaaggggagacggagatctacctgaccgaacaacaggcactggcggagcgttttaacgat
gtgccgctgtgggtccgtccgcaaagtttcttccagactaatccggcggtcgccagccag
ctgtacgctaccgcgcgcgactgggtacgacagctgccggttaaacatatgtgggatctg
ttctgtggcgtggggggctttggtttacactgcgcgacgcctgacatgcagttaaccggg
atcgaaattgcgccagaggccattgcctgtgcaaagcagtcagccgctgaactgggctta
acgcgtttgcaatttcaggcgctggactccactcagtttgccactgctcagggggaggtg
ccggagctggtgctggttaacccgccgcgccgcggcattggtaaaccgctgtgtgattat
ctctcaacgatggcaccgcgttttatcatctactccagctgtaacgcccaaaccatggcg
aaagatgtccgagaactgcctggttaccgcatcgaacgggtacagctttttgatatgttc
ccgcacaccgcgcactatgaagtgctgacgctgctggtgaagcaataa
DBGET
integrated database retrieval system
