KEGG   Sarcophilus harrisii (Tasmanian devil): 100914817
Entry
100914817         CDS       T02286                                 
Name
(RefSeq) single-stranded DNA cytosine deaminase
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
shr  Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03250  Viral life cycle - HIV-1
shr05170  Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:shr00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    100914817
 09160 Human Diseases
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    100914817
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:shr03019]
    100914817
Messenger RNA biogenesis [BR:shr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100914817
SSDB
Motif
Pfam: NAD1 APOBEC2 SNAD4 APOBEC_N NAD2 APOBEC4 APOBEC3 APOBEC4_like APOBEC1 APOBEC_C dCMP_cyt_deam_1 TMEM87A-B_GOLD
Other DBs
NCBI-GeneID: 100914817
NCBI-ProteinID: XP_003765824
Ensembl: ENSSHAG00000005252
UniProt: G3VS78
LinkDB
Position
3:146202590..146219820
AA seq 260 aa
MPLRLKKEISEEEFYEHFCNIKTPHQTLLCFSLKEDDKTLWKLWGHAYNNPGQYHAEILV
LREIEDYLMANILNATKYTITWFLSYSPCHCCCDEITNFLMKFQIKIEFNIKAARPYYFD
NDKNQKGLKILKKLGVLIKMMDFTDYEECLYLFVDPCMKFTAWPDLEVQSIANKMIFHHL
FSKEDDRLDYHSFPIDDSFPVHTIAASDFESQVLVDKIPPGDPNKTPDKKDELSDIRTPQ
KTCFPQRTSEHGKGVKRKLF
NT seq 783 nt   +upstreamnt  +downstreamnt
atgcctctgagattaaagaaagaaatatctgaagaggaattctatgaacatttttgcaac
ataaaaacaccccaccaaactttgctctgctttagtctgaaagaagatgacaaaacgctt
tggaaattatggggccatgcttataataacccaggccaatatcacgctgaaatcctagtt
ttaagggaaattgaagactatctaatggcaaatattctcaacgctacaaagtacactatt
acctggtttctttcctatagtccctgccattgttgctgtgatgaaataaccaatttttta
atgaagtttcaaatcaaaattgaatttaacatcaaagcagcaaggccatattattttgac
aatgataagaatcagaaaggtttaaaaatactgaaaaaactgggagtcctgatcaagatg
atggacttcactgactatgaagaatgtttgtacttatttgtggatccttgtatgaagttt
actgcatggccagatttagaagtgcaaagtatagccaataaaatgatatttcatcattta
ttctccaaggaggatgacagattagattatcattcatttccaattgatgattcttttcca
gttcacactatcgcagcatctgattttgaaagccaagtcttggtcgacaagattccacca
ggagatcctaacaagacaccagataagaaagatgagttatcagacataagaactccacaa
aaaacttgttttccccagagaacaagtgaacatgggaaaggagtcaaaagaaaactcttt
tga

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