Sarcophilus harrisii (Tasmanian devil): 100923258
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Entry
100923258 CDS
T02286
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
shr04040
]
100923258 (SCN4A)
Ion channels [BR:
shr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100923258 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
Motif
Other DBs
NCBI-GeneID:
100923258
NCBI-ProteinID:
XP_003768502
LinkDB
All DBs
Position
4:323078347..323137508
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AA seq
1812 aa
AA seq
DB search
MASPPVPLLVPPGPDCLRPFTPESLQAIEKRAIEEEARLLRNKQLEIEDPERKPRSDLEA
GKNLPLIYGDPPPEIIGIPLEDLDPYYSDKKTFIVLNKGKAIFRFSATPALYMLSPFSGI
RRLAIKILIHSLFSLFIMITILANCVFMTMSEPPPWSKNVEYTFTGIYTFESLIKMLSRG
FCIDDFTFLRDPWNWLDFSVIMMAYLTEFVDMGNISALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRQKCVKWPPPISDINETWYDNGTA
LFSNDTGFGNDTLYSNFTFDWDAYINDEGNFYFLDGANDALLCGNSSDAGHCPEGYECMK
AGRNPNYGYTSYDTFSWAFLALFRLMTQDYWENLFQLTLRAAGKTYMIFFVVIIFLGSFY
LINLILAVVAMAYAEQNDATLAEEQEKEAEFQQMLEKLKKHQEEQEKLVSAQAALESGEG
DGDQIQGKDCNGGLDSGEVQSNPQRQSCSMDSAVSDAMEELEEAHQKCPPWWYKCAHTLL
VWNCCAPWVKLKKILHLIVMDPFVDLGITICIVLNTVFMAMEHYPMTPEFEHVLTVGNLV
FTGIFTAEMVLKLIAMDPYEYFQQGWNIFDSFIVTLSLVELGLANVQGLSVLRSFRLMRV
FKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKECVCKIDSS
CSLPRWHMHDFFHSFLIVFRILCGEWIETMWDCMEVAGQPMCLTVFLMVMVIGNLVVLNL
FLALLLSSFSADSLAASDDDGEMNNLQIAIGRITWGIDYAKAFILALLHGQILAPGDMKT
KKAEEGEGGEEEKKEQQQQQQQEEEEDLKKDNHILNHIDVVESPPTSIELDHMNFINNPY
LTVQVPIASEESDLEMPTEEETDTFSEAEEIKKPPPLKCDGNSSVCSTADYKPPEEEEQP
QEEENPEGELPEECFTEACVKRFPFLYVDITSDRGKIWWNLRKACFRMVEHNWFETFIVF
MILLSSGALAFEDIYIEQRKVIRTILEYADKVFSYVFVLEMLLKWVAYGFKVYFTNAWCW
LDFLIVDVSIISLVANWLGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPS
IMNVLLVCLIFWLIFSIMGVNLFAGKYYRCINTTTSEIFDISEVNNKSDCFKLMDTGEVR
WVNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSREIEEQPQYEVNIYMYIYFVFFI
IFGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQ
NKIQGMVYDFVTKQMFDIMIMFLICLNMVTMMVETDDQSQLKIDILYNINMVFIIIFTGE
CVLKMVALRHYYFTVGWNIFDFVVVILSIAGLALSDLIQKYFVSPTLFRVIRLARIGRVL
RLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAYVKKESGIDDIFNF
ETFGNSIICLFQITTSAGWDGLLNPILNSGPPDCDPELENPGSSVKGDCGNPSIGICFFC
SYIIISFLIVVNMYIAIILENFNVATEESSEPLGEDDFEMFYETWEKFDPDATQFIAYSR
LSDFVDTLQEPLKIAKPNKIKLITLDLPMVPGDKIHCLDILFALTKEVLGDSGEMDALKQ
TMEEKFMAANPSKVSYEPITTTLKRKQEEVCAVKIQRAYRRHLLRRSMKQASYLYRHSGD
SSGFEAPEKEGLIADAMNKMYGNNSSQKEEDKAKGEAGPALGLMPIDAPNSSQPSPEPQG
QGVRPGVKESLV
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcccacctgtgcctttacttgtgccccctggacccgactgcttgcgtcccttc
actcctgagtccctgcaggccatagagaagcgggcaatagaagaggaggcaagactcctt
cgaaataagcagctcgagattgaggaccctgagaggaagccacgaagtgacctggaagca
gggaagaatctacccctcatctatggagaccctccacctgagatcattggcatccccctg
gaggatctggatccctactacagtgacaagaagaccttcatcgtgttgaacaagggcaag
gccattttccgattctcagccaccccagccctgtatatgctgagccccttcagtgggata
aggcgtttggccatcaaaattctcatccattcattgttcagcttgttcatcatgatcacc
atcctggcaaactgtgtatttatgaccatgagtgaacccccaccctggtctaaaaacgtg
gagtacacctttacaggaatctacacttttgagtctctcatcaagatgctctctcgaggt
ttctgcattgatgacttcacatttctccgggacccctggaattggctagacttcagtgtc
atcatgatggcgtatctgacagaatttgtggatatgggcaacatctcagccctgagaacc
tttcgtgtgcttcgagccctgaagactataacagtcattccaggactgaagacaattgta
ggggcgctgatccagtccgtgaagaagctgtcagatgtgatgattctcacagtcttttgc
ctgagtgtttttgccttagttgggctacagctgttcatgggaaatctcaggcaaaagtgt
gtgaaatggccacccccaatcagtgatatcaatgagacttggtatgacaacgggacagcc
ttgttcagcaatgacacaggttttggtaatgacacgttatacagcaactttacctttgac
tgggatgcctacatcaatgatgaagggaatttctatttcctggatggtgccaatgatgcc
ctgctctgtggaaatagcagtgatgcagggcactgccctgagggctatgagtgcatgaag
gctggccggaatcccaactatggctataccagttatgacaccttcagctgggcctttctt
gccctcttccgactcatgacacaagactactgggagaacctcttccagttgacccttcga
gcagctggcaagacctacatgatcttctttgtagtcatcatcttcctgggctccttctat
ctcatcaacctcatcctggcggtagtagcaatggcctacgcagaacagaatgatgctacc
ctggcagaggagcaagagaaggaggcggagttccagcagatgctagagaaactcaagaag
catcaggaggaacaggagaaactggtcagtgctcaagcagccctggaaagtggtgagggg
gatggagaccagatccaggggaaggactgcaatggcggactggattcaggagaggtacaa
tctaacccccaaagacaaagctgcagcatggatagtgccgtctcggatgccatggaagag
ttggaggaggcccatcagaagtgcccgccatggtggtacaagtgtgcccatacattgttg
gtgtggaattgctgtgctccgtgggtcaagctaaagaagattttgcacctgattgtcatg
gacccctttgtggacttgggcatcaccatctgcattgtgctcaacaccgtcttcatggcc
atggagcattaccccatgactcccgagtttgagcatgtgctcactgtgggcaatctggtt
ttcacaggcatcttcactgcagagatggtgctgaaactgattgcgatggatccctatgag
tacttccaacaaggatggaacatctttgacagttttattgtcaccttgagcttggtagag
ctgggactggccaatgtgcaagggctgtctgtgcttcggtccttccgcttgatgagagtc
ttcaaactggccaaatcctggcccacactgaatatgctcatcaagatcattggcaactct
gtgggagctttggggaacctgacattggtgttggccatcattgtcttcatcttcgctgtg
gtgggcatgcaactctttgggaagagctacaaggagtgtgtgtgtaagattgattccagc
tgcagcctgccccgctggcatatgcatgacttcttccattcctttctcatcgtcttccga
atactgtgtggcgaatggatcgagaccatgtgggattgtatggaggtggccggtcagccc
atgtgtctcactgtcttcctcatggtcatggtcattggaaatcttgtggttctgaatctg
ttccttgccctgctcctgagctccttcagtgctgacagcctggcagcctctgacgacgat
ggggagatgaacaaccttcaaattgccattggacgtatcacctggggcattgattatgcc
aaagccttcatcctggctctcttacatggtcagatcctggctcctggggacatgaagact
aaaaaggctgaggagggagaaggtggcgaagaagagaagaaggagcagcaacagcagcag
cagcaagaggaagaggaagacttaaaaaaggacaatcacatcctgaaccacattgatgtg
gtagaatccccaccaaccagtattgaacttgaccacatgaactttatcaacaacccatac
ttgacagtgcaggtgcccatcgcttctgaggagtctgacctagagatgcccacagaggag
gaaacggacacattttctgaggctgaagagatcaagaagccaccacccctcaagtgtgat
gggaactcctcggtatgcagcacagctgactacaaaccacctgaggaagaagagcagccc
caagaagaggaaaaccctgaaggagagctccccgaggagtgtttcactgaggcttgtgta
aagagattccctttcctctatgtggacatcacctcggatcgggggaaaatatggtggaac
cttcgaaaggcttgcttcaggatggtggaacacaactggtttgagacattcattgtgttc
atgattctacttagcagtggagccttagcattcgaagatatctacattgaacaacggaag
gtgatccgaacgatcctagagtatgcggacaaggtcttctcctatgtatttgtcttggag
atgctgctcaagtgggtggcttatggctttaaagtgtatttcaccaatgcctggtgctgg
cttgacttcctcattgtagatgtctccatcatcagcctggtagccaactggttgggctat
tctgaacttggtgccatcaagtcactccggacacttcgggcccttagaccactccgggcc
ctgtccagatttgaaggcatgagggtggtagtgaatgccctcctgggtgccatcccttcc
atcatgaatgtgttgcttgtttgcctgatcttctggctcatcttcagcatcatgggtgtc
aacttgtttgcggggaagtattaccgatgcatcaatactaccacctcggaaatttttgac
atctctgaagtcaacaacaagtcagattgcttcaaactgatggacacaggggaggttcga
tgggtcaatgtcaaggttaactttgacaatgtgggccttggctacctctcactcctgcag
gtggctactttcaagggctggatggacatcatgtacgcagctgtggattctcgagagatt
gaagaacaaccccagtatgaagtgaatatttatatgtacatctacttcgtcttcttcatc
atctttggagcattcttcaccctcaatctcttcattggagtcatcattgacaacttcaat
cagcaaaaaaagaagtttggaggaaaggacatcttcatgacagaggaacagaagaaatat
tataatgccatgaaaaaactgggctccaagaagccacagaagccaattcctcgacctcag
aacaagattcagggcatggtgtatgactttgtgaccaagcagatgtttgacatcatgatc
atgttcttgatctgtctcaacatggtcaccatgatggtggagacagatgaccagagccag
ctcaagattgacatcctttacaatatcaacatggtcttcatcatcatcttcacgggcgag
tgtgtgctcaagatggtagcgctgcgtcattactacttcactgttggctggaacattttt
gactttgtggttgtgatcctctccattgcgggtcttgccctttctgacttgatccagaaa
tactttgtttcgcccactctgttccgagtaattcgtctggctcggatagggcgcgtcctg
agactgatccgaggtgccaaaggtatccggaccttgctcttcgccctcatgatgtctctc
cccgccctcttcaacattggtctgctcctcttcctcgtcatgttcatctactccatcttt
ggcatgtcgaactttgcctatgtgaagaaagagtctggcattgatgacattttcaacttt
gagacctttggcaacagcatcatttgccttttccagattaccacctcagctggctgggat
gggcttctgaaccccatccttaacagtgggccccccgactgtgaccctgagctggaaaac
ccaggcagcagcgtcaaaggtgattgtggcaatccttccatcggcatctgcttcttctgt
agctacatcatcatctccttcctcattgttgtcaacatgtacatcgccatcattctggag
aacttcaatgtggccactgaggagagcagtgagccactgggggaagatgactttgagatg
ttctatgagacatgggaaaagtttgacccagatgccacacaattcattgcctacagtcgc
ctctctgactttgtggacaccctacaggagcctctgaagatcgccaaacccaacaagatc
aaactcatcactctggatctgcctatggtccctggagacaagatccactgcctcgatata
ctctttgctctaactaaagaggttctaggagactctggtgagatggatgccctcaagcag
accatggaggagaagttcatggcagccaacccatccaaggtctcctatgaacccatcacc
actacactgaagaggaagcaggaggaggtatgtgctgtgaaaatccaaagagcctaccgc
cgacatttacttaggcgttcaatgaagcaagcctcttatctctatcggcatagtggagat
agcagcgggtttgaggctccagagaaggaggggctgattgccgatgccatgaacaagatg
tatgggaataacagctcccagaaagaagaagacaaagcaaaaggggaggctggtcctgcc
ctgggtctcatgcccattgatgccccaaactcaagccagccatccccagaaccacagggg
caaggagtccgcccaggggtcaaggagtcacttgtctaa
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