Sarcophilus harrisii (Tasmanian devil): 100924692
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Entry
100924692 CDS
T02286
Name
(RefSeq) LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03018
RNA degradation
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100924692
09123 Folding, sorting and degradation
03018 RNA degradation
100924692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shr03019
]
100924692
03041 Spliceosome [BR:
shr03041
]
100924692
Messenger RNA biogenesis [BR:
shr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100924692
mRNA degradation factors
5'-3' decay
Lsm complex
100924692
Spliceosome [BR:
shr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
100924692
Complex C
U2 snRNP components
100924692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
RuvC
Motif
Other DBs
NCBI-GeneID:
100924692
NCBI-ProteinID:
XP_012408550
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All DBs
Position
6:complement(150582958..150583744)
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AA seq
99 aa
AA seq
DB search
MADDTDQEKTANTEEDPLDLIRLSLDEQIYVKMRNDQELRGKLYAYXNVILGEVEETVTT
IEIDEETCEDIYXSTNWNIPMLFVQGDGVVLVATPLRVG
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgatacggatcaggaaaagaccgccaatactgaagaggatcccctggatctc
attaggctcagtctagatgaacaaatttatgtgaaaatgagaaatgaccaagaactacga
ggaaaattgtatgcttatntaaatgtgattttgggagaagtagaagagactgtgacaact
atagaaattgatgaagaaacttgtgaggatatctatnaatcaaccaattggaacattcca
atgctgtttgtccaaggtgatggggttgtattagtagctactccattgagagttggatga
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