Sarcophilus harrisii (Tasmanian devil): 100931445
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Entry
100931445 CDS
T02286
Symbol
RAPGEF6
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr04015
Rap1 signaling pathway
shr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
100931445 (RAPGEF6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100931445 (RAPGEF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
cNMP_binding
PDZ_6
RA_2
PDZ_2
Motif
Other DBs
NCBI-GeneID:
100931445
NCBI-ProteinID:
XP_031808924
Ensembl:
ENSSHAG00000006253
LinkDB
All DBs
Position
2:complement(349379912..349621957)
Genome browser
AA seq
1662 aa
AA seq
DB search
MHSPVDPSAKQALRKKPPERTPEDLNTIYSYLHGMEILSNLRERLLRFISARARYERYNS
NQILFCSQTIARCWYILLSGSVFMNDSVIIAPQSFGEQFGGRRGCDCIVLEPSEIIVVEN
SKDNEEDLQREIAGRRSRRRFRKINHKGERQVITDSVDPNSCLTLPADLNKLHLTENPHP
QVTHVPSSQSGCSIASDSGSSSLSDIYQATESEIGDVDLTGLPEAPVDSEDEEEEDEDID
RTADPLLGRDLVRECLEKEPADKTDDDIEQLLEIMHQLPAFANMTMSVRRELCSVMIFEV
VDQAGAVILADGQELDSWYVILNGTVEISYPDGKSESLCMGNSFGIIPTLDKQYMNGVVR
TKVDDCQFVCIAQEDYWRILNHVEKNTHKVEEEGEIVMVQEHRELDRSGTRKGHIVIKAT
PERLIMHLIEEHSVVDPTYVEDFLLTYRTFLESPLEVGNKLLEWFKLGSLRDKVTRVVLL
WVNNHFNDFEGDPAMTGFLEEFEKNLEDTKMKGHLRLLNIACAAKAKWRQIIFQKTSRES
PLFFSLTGGSEGFGIFVEGVEPGSKAAEVGLKRGDQIMEVNGQNFENITLGNALEILKNN
THLSLTIKTNIFVFKELINRTKQDKNGIPHIPKIAEKKSNRYSIPDMPGDMEHMFPQEKG
NKKIKANTVSVGRNKIRKILDKTRFSILPPKLFRRIFGDGNVSQSQDDSVLGTRQCRHSL
AIMPIPGTLSSSSPDLLQPTTSMLDFSNPTAVGFYYIPDQVIRVFKADQQSCYIIISKDT
TAKEVVSHAVHEFSLMGAPETYSLCEVSVSSEGVIKQRRLPDQFSKLADRIQLNGRYYLK
NNMETETLCSDEDAQELLRESQITLLQLSTIEVATQLSMRDFELFRNIEPTEYIDDLFKL
NSKTGNTHLKEFEAIINQETFWVATEILTESNQLKRMKMIKHFIKIALHCRECKNFNSMF
AVISGLNLAPVARLRGTWEKLPSKYEKHFQDLQDLFDPSRNMAKYRNILSNQSMQPPIIP
LFPIVKKDITFLHEGNDSKVDGLVNFEKLRMIAKEIRQVVRMTSANMDPAVMFRQRKKRW
RSLGSLSQGSTNSNMLDVQGGAHKKRARRSSLLNAKKLYEDAQMARKVKQYLANLNVETN
EEKFQMMSLQWEPAYSTLTKNLNERRSTKSSEMSPVPMRSVGQITKAHLHQPNRVSQVLQ
VPAVNLYPIRKKGPTKDHIAFGTSAPQKILGMSEEVSGKKLAEDTLSMASSLHSSPPASP
QGSPRKVDNISSDHGSQLHLYGSSSCLTSETSTKTSGPRNYGIGYTHIPSVKSENFSDSS
HSEISSRSSIVSNCSVDSMSAALQEDRCLPQSFSSVDSVGAAEKKDHPSVATDHNQHVIG
WTLSKPSVVKGLAVSSSLSTEEISHEHITIEAADSGRGSWTSCSSSSHDNFQNIQNQKSW
DLLNSYRHTHLDIPIAEVEPTNCEPYLYPEGYSQINSQPKDAAEWIQSRQSWASSSSLSD
TYETNYGTVKRRVIEDSPAEPEEASDSHPSTDATYKTVTSSTEKGLIVYCVTSPKKDDRY
REPPPTPPGYMGISLADIKEGPPHHPHLKPPDYSVALQRSKMVHSNLSRLSSACLVSEPM
ACISPKILFQPQRNSLQPSHPKLADVTDADSEADENEQVSAV
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgcccgtggaccccagtgccaagcaggctctgaggaaaaagccccccgaaagg
accccggaggatttaaatactatttattcttatcttcatgggatggagattttatcaaat
ctcagggaacgcctgctaaggtttatttctgcaagagcacgttatgaaagatataatagc
aatcagattcttttttgctctcaaaccattgccagatgttggtatattcttctttctgga
tctgtatttatgaatgactctgtaataattgctcctcaaagttttggtgaacagtttgga
ggaagaagaggatgtgactgtattgtactagagccttcagaaataattgtggtggagaat
tccaaagataatgaagaagatctccaaagagaaattgctggaaggcgatctcgacgaagg
tttaggaaaattaaccataaaggagaacgtcaggttatcactgacagtgtggatcctaac
agctgtcttactcttcctgcagaccttaacaagttgcaccttactgaaaaccctcatcca
caggtgacccatgtcccttctagccagtctggatgtagcattgccagtgactcagggagc
agcagtttatctgatatctaccaggctacagaaagtgagataggagatgtggatttgaca
ggtctccctgaagcacctgttgattctgaggatgaagaagaggaagatgaagatatcgat
cgaacagctgatccattactaggaagagaccttgttcgagaatgtcttgaaaaggaacct
gcagataaaactgatgatgacattgagcaattactggaaattatgcatcagctgcctgcc
tttgcaaatatgaccatgtctgtaagaagagaactttgctcagttatgatctttgaagtg
gtagaccaagctggagctgtcattcttgcagatggtcaagaacttgactcatggtatgtc
attttaaatggaactgtagaaatcagctatccagatggaaaaagtgaaagtctgtgtatg
gggaacagctttggaattattcctactctggataagcagtacatgaatggagttgtcaga
actaaagtagatgactgtcaatttgtatgtatagcccaggaggactattggagaatcttg
aatcatgtagaaaaaaatacccataaagttgaagaagaaggagaaattgttatggtgcaa
gaacatagagagctggatcgtagtggaactcgaaaagggcatattgtcatcaaggcaaca
cctgaacgactcatcatgcatttaatagaagaacattcagttgtggacccaacttatgta
gaagattttctgctgacatataggacatttcttgaaagtcccttagaagttggaaataag
ctattagaatggtttaaacttggcagtttaagagacaaggtcacacgagtagtgctttta
tgggtaaataatcatttcaatgattttgaaggagatcctgctatgactggatttctagaa
gaattcgaaaaaaatctagaagatacaaaaatgaaaggacatctccgtttattaaatatt
gcttgtgctgccaaggctaaatggaggcaaattatttttcagaagacttcccgggaatca
ccactttttttcagccttactggaggaagtgagggatttggcatttttgtggaaggagta
gaaccaggcagcaaagctgctgaagttgggcttaaacgtggtgaccagataatggaagtt
aatggacaaaattttgagaacattacattggggaacgctcttgaaatattaaagaataat
actcatctctctctaactataaagaccaacatctttgtttttaaagaattaattaatagg
acaaagcaagataaaaatggtattcctcatattcccaaaattgctgagaagaaaagtaat
cgctactctatccctgatatgcctggagatatggaacatatgtttccacaggagaaagga
aataaaaaaattaaagcaaacactgtttcagttggaagaaacaaaatcaggaaaatttta
gataaaacacgattcagcattttgcctcccaagttattcaggagaatttttggtgatggc
aatgtgagccagtcacaagatgacagtgtccttggaacaaggcagtgtaggcatagtcta
gctataatgcctattcctggaactctttcctcaagtagccctgatctcctgcagcctaca
actagcatgttggatttttctaatccaacagctgttggtttttactatattccggatcaa
gttataagagtttttaaagcagatcaacaaagctgttatattatcatcagtaaggacacc
acagccaaagaagttgtttcccatgcagtacatgagttcagtttgatgggagcaccagag
acctattctctctgtgaggtttctgttagttcagaaggtgttataaagcagagaagactt
ccagatcagttctccaaattagcagacagaattcaactaaatggaagatactatctgaag
aacaacatggaaacagaaaccttatgctcagatgaagatgctcaggaattacttagagaa
agtcaaataaccttactgcaacttagtaccattgaggtagcaacccagctgtcaatgaga
gactttgaattatttcgaaatattgaacctactgaatacatcgatgatctttttaagtta
aactccaaaactgggaatactcacttgaaagaatttgaggccattataaaccaagaaaca
ttctgggttgcaacagaaattttgacagaatcaaatcagctcaaaagaatgaaaatgatt
aagcattttattaaaattgctcttcactgtcgagaatgcaagaactttaattctatgttt
gcagtaataagtggtttgaaccttgcacctgttgcaagactcagaggtacttgggagaaa
ctgccaagcaaatacgaaaaacactttcaagatcttcaagatctttttgatccatctaga
aacatggcgaagtatcgaaatatccttagtaatcaaagtatgcaacctccaattattcca
ctctttcctattgtcaagaaggatattacatttctgcatgaaggaaatgattccaaggta
gatgggttagtaaactttgagaaactaagaatgattgccaaagaaattcgtcaagttgtc
cgaatgacttctgctaatatggatcctgctgtaatgttccgacaaaggaagaagaggtgg
aggagtttggggtcattgagtcagggtagtacaaattcaaacatgctggatgttcaggga
ggagctcacaaaaaacgagcccgccgaagctcactgctgaatgccaagaagctgtatgag
gatgctcagatggccaggaaagtgaagcagtatcttgccaaccttaatgtggaaaccaat
gaggaaaaattccagatgatgtctctgcaatgggagcctgcatatagtactttgaccaag
aatttaaatgaaagacgatcaacaaaatcatctgaaatgtctccagtacctatgagatca
gttggtcaaatcacaaaagcccatttgcatcagccaaacagagtgagccaagtacttcaa
gttcctgctgttaatttgtaccccatcaggaaaaagggtccaacaaaagatcacattgcc
ttcggtactagtgcaccacagaaaattttaggaatgtctgaagaagtaagtggtaagaaa
ctagcagaagacactttatcaatggcatcatctttgcattcaagccctcctgcatctcct
caagggtcacctcgcaaagttgacaatatcagttctgatcatggcagccagctacacctt
tatgggtcctcctcatgtcttaccagtgaaaccagcaccaagaccagtggccctcgaaac
tacggaataggttatacccatataccatcagtaaaatccgaaaatttctcagactcgagc
catagtgagatttcatcaaggtccagcatcgtgagtaattgttctgttgactcaatgtct
gcagctttacaagaggatcggtgcttaccccagtcttttagcagcgtggactcagttgga
gcagcagaaaagaaggatcatccttcagtggcaactgaccacaaccagcacgtgattgga
tggaccctctcaaaaccttcagtagtcaaaggtttagctgtttcatcatctttgagcact
gaggagatttctcatgaacacatcaccatagaagcagctgacagtggtcgaggaagttgg
acttcatgttcaagtagttcccatgacaacttccagaatattcagaaccagaagagctgg
gatcttttaaactcttatcgacacactcatttggatatccccattgctgaagtggaaccc
acaaactgtgagccttatttgtatccagagggctactctcagataaacagtcagcctaaa
gatgctgcagaatggattcagtcgagacaaagctgggcctcttcgagctctctctcagac
acatatgagacaaactatgggacagtgaagagaagagtgattgaggattcccccgcagag
ccagaggaggcttcggattctcatcctagtactgatgccacctataaaactgttacatcc
agtacagaaaaaggcttgatagtgtactgtgtcacctcacctaagaaggacgataggtat
agggagccacctcccaccccaccaggatacatggggatttctttagcggatataaaagaa
ggaccaccccaccacccacacttaaaacctccagactatagtgtggcattacagaggtca
aagatggtacatagcaacctctctagactttcatcagcctgtctcgttagtgaacctatg
gcctgtatttcaccgaagatcctatttcagccacagcgaaatagtctgcaaccatcccat
cctaaactagccgatgtgactgatgcagatagtgaagcagatgaaaatgagcaagtttca
gcagtctag
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integrated database retrieval system
