Sarcophilus harrisii (Tasmanian devil): 100933322
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Entry
100933322 CDS
T02286
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
shr
Sarcophilus harrisii (Tasmanian devil)
Pathway
shr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100933322 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
shr03041
]
100933322 (EFTUD2)
Spliceosome [BR:
shr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100933322 (EFTUD2)
Complex C
U5 SnRNP specific factors
100933322 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
100933322
NCBI-ProteinID:
XP_031821853
Ensembl:
ENSSHAG00000008134
UniProt:
G3W1U6
LinkDB
All DBs
Position
4:328212546..328255394
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGREAKDLDEMDDDDDDDDIGDHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFVLEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacacagacctctatgatgagtttgggaattatattggaccagagctagattctgat
gaagatgatgatgaattgggtagagaagccaaagatcttgatgagatggatgatgatgac
gatgatgatgacataggagaccatgatgatgatcaccctgggatggaggtggtattgcat
gaggacaagaaatactacccaactgctgaggaggtctatggccccgaggtagagacaatt
gtgcaagaagaagacactcagccgctcacggagccgattattaaacctgtaaaaaccaag
aaattctctctgatggagcagacattacctgtcacagtgtatgaaatggatttcttggca
gacttgatggacaactcagagttgatcagaaatgtgactttatgtggacatctccaccat
ggcaaaacttgttttgtagactgtttaatagagcagactcatccggaaatcaggaagcgc
tatgaccaagatctctgctacacagacatcctcttcactgagcaagagaggggcgttggc
atcaaaagtactccagtgacagtggtcctgccagataccaagggaaagtcttacctcttc
aacatcatggacacaccaggacatgtgaatttttctgatgaagtaacagctggcttgcgc
atctctgatggggtagtgcttttcatcgatgcagccgagggggtgatgctgaacactgag
cgactgatcaagcatgcagtgcaggagaggctggctgttactgtgtgcatcaataagatt
gaccggctgattttagagctcaaacttcccccaacagatgcctattacaaactgcgacac
attgtggatgaggtcaatggattaatcagcatgtattccactgatgagaacttgatcctc
tctccacttctgggcaatgtctgcttttccagctcccaatacagcatctgcttcacatta
ggctcctttgccaagatctatgctgacacttttggtgacatcaattaccaagagtttgcg
aagaggctctggggtgacatttacttcaatcctaaaacgcggaagtttaccaaaaaggcc
ccaaccagcagctcccagcggagctttgtggaatttgtcttagagccactttataagatc
ttagctcaggttgtgggagatgtggacaccagtctcccgaggaccctggatgagctgggc
atccatctgaccaaagaagagctgaagctgaacatacgccctctccttagactggtctgc
aaaaagttctttggggagttcacaggttttgtagatatgtgtgtacagcatataccttct
ccaaaggtgggagccaagcccaagattgagcatacttacactgggggtgtagactcagac
cttggtgaggccatgagtgactgtgatcctgacgggcctctgatgtgccataccaccaag
atgtacagcactgacgacggggtacaattccatgcctttgggcgggtgctaagtggcacc
atccatgctgggcagcctgtgaaggtgcttggggaaaactatactttggaggatgaagag
gattcccagatctgtactgtaggccggctgtggatttctgttgccaggtaccacattgaa
gtgaaccgagttcctgcaggcaactgggttttaattgagggtgtggatcaacccattgtg
aagactgcaactatcactgagccccgaggcaacgaggaggcgcagatcttccggccttta
aagttcaatactacttcagtcatcaagattgctgtggaaccagtcaacccctccgagcta
cccaagatgctggatggcctgcgcaaggtgaacaagagctacccatccctcactactaag
gtggaagaatctggggaacatgtgatcctgggcactggggagctgtacttggactgcgtg
atgcatgacttacggaagatgtactcagagatagacatcaaggtggctgatccagttgtc
acattttgtgagacagtggtagaaacttcttccctcaagtgttttgctgaaacacccaat
aaaaaaaacaaaatcaccatgattgctgaacctcttgagaagggtctagcagaggacata
gagaatgaagtggtgcagatcacttggaacaggaagaagctaggagagttcttccagaca
aaatatgactgggatttgctggctgctcgttccatctgggcctttggccctgacgccact
ggccccaacatcctagtggatgatactttgccctcagaggtggataaagctttgctgggg
tcagtgaaggatagcattgtccaaggtttccagtggggtaccagagaaggacccctctgt
gatgagctgattcgcaatgtgaagttcaagatccttgatgcagtcgttgcccaagaacca
ctgcaccggggaggaggccagatcattcccaccgccaggagggttgtctattctgccttc
cttatggctactcctcgtctaatggagccttactactttgtggaagttcaagcccctgca
gactgtgtctctgcagtctacacagtcttggccaggcgcagaggccatgtgacacaggat
gcacctatcccaggctctccactctataccatcaaagccttcatcccagctattgactca
tttggttttgaaactgatctccggacccacacccagggacaagccttctctttatctgtt
ttccaccactggcagattgtacctggtgacccattggataaaagcattgtcatccgtccc
cttgagccacagccagcccctcacttggcccgggagttcatgatcaaaacccgtcgtaga
aagggtctgagtgaggatgtaagcatcagcaagttcttcgatgatcctatgttgttggag
ctggccaagcaggatgtggttctcaactaccccatgtga
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