Shouchella hunanensis: PQ477_13680
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Entry
PQ477_13680 CDS
T09126
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shua
Shouchella hunanensis
Pathway
shua03030
DNA replication
shua03410
Base excision repair
shua03420
Nucleotide excision repair
shua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ477_13680 (ligA)
03410 Base excision repair
PQ477_13680 (ligA)
03420 Nucleotide excision repair
PQ477_13680 (ligA)
03430 Mismatch repair
PQ477_13680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shua03032
]
PQ477_13680 (ligA)
03400 DNA repair and recombination proteins [BR:
shua03400
]
PQ477_13680 (ligA)
Enzymes [BR:
shua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PQ477_13680 (ligA)
DNA replication proteins [BR:
shua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PQ477_13680 (ligA)
DNA repair and recombination proteins [BR:
shua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PQ477_13680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PQ477_13680 (ligA)
MMR (mismatch excision repair)
DNA ligase
PQ477_13680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PQ477_13680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
RNA_pol_A_CTD
BRCT_2
TFIIA_gamma_N
Motif
Other DBs
NCBI-ProteinID:
WDF02561
LinkDB
All DBs
Position
2700964..2702979
Genome browser
AA seq
671 aa
AA seq
DB search
MDKQQAEGKMKELKEQLEDYGYHYYVLDQPKVPDAEYDRLLQELVHLEEAFPELATDDSP
TMRIGGEPASAFKKVTHRVPMMSLSNAFSADDLRSFDRRVRQAVGDQVSYVCELKFDGLA
ISLTYENGSLVRGATRGDGTTGEEITSNLRTIPSIPLRLKKPVSIEVRGEAYMPKQSFER
LNEAKEQAGEEKFANPRNAAAGSLRQLDPKIAAKRNLAMFAYSIGELSGQTITSHHQGLA
LLDDLGFKVNKEATVCQDIDEVIAFTEKWVENRHELPYEIDGIVIKVNDLAQHETLGFTA
KSPRWATAYKFPAEEVVTTLYDIELNVGRTGVVTPTAILEPVVVAGTTVKRASLHNEDLI
REKDVKLGDTVIVKKAGDIIPEVVGVIIEKRTGKEIDFHMPTECPECRSELDRIEGEVAL
RCLNPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFSHQLIADVADLYTLDRDELLAL
ERMGEKSVDNLLDAIQRSKDNSLERLLFGLGIRFVGAKAAKTLALAFDSMGNLRQASVDE
LLSVNEIGEKMADSIVSYFDKPEVDELLDKLKQAEVNMQYRGARPVIEQSDLESPFVGKT
IVLTGKLSHWNRKEAQEKIEALGGTVTGSVSKKTDIVIAGEDAGSKQKKAESLGITIWTE
AKFVQTMEDLD
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggacaagcaacaagctgagggcaagatgaaagagttgaaagagcaattagaggattac
ggctaccattactatgtccttgatcaaccgaaagttcctgatgcagaatatgatcgctta
ctgcaggagttagttcacttagaggaagcgtttcctgagttagcaacagacgattctccg
acgatgcgtattggcggggaacctgcatctgcatttaaaaaagtaacccatcgtgtcccg
atgatgagcttgtctaacgctttttcagccgatgatttacgtagttttgaccgtcgcgtg
cgccaagcagttggtgatcaggtttcgtatgtgtgcgagctgaagtttgatggtttagcc
atctccttaacgtatgaaaacggttcgcttgtacgaggcgcgacaagaggagatggaact
acgggagaagagattacaagcaatttgcgcacaatcccttctatcccattacgcttgaaa
aagcctgtttctattgaagttcgcggcgaagcctatatgccaaaacaatcgtttgagcgg
ttaaatgaagcgaaggaacaagctggggaagagaaatttgcgaatcctagaaatgcggca
gctggttcattacgacagcttgaccctaagattgcagctaaacggaatttagctatgttt
gcttattcaattggtgaattaagcggtcagaccattaccagtcatcatcaaggattggcg
ttgttagatgatttaggttttaaagtaaacaaagaagcgacagtgtgccaggacatcgat
gaagtcattgcttttacggaaaagtgggtggaaaatcgtcatgaactcccttacgaaatt
gatggaatcgtaattaaagtgaatgatcttgctcaacacgaaacgttgggctttacagct
aaaagtccacgatgggcgacagcatataaatttcccgctgaggaagtagtgacaacatta
tacgatattgaattaaacgtaggacgaacaggtgttgtgacgccaaccgctattctcgaa
ccagttgttgttgcagggacaaccgtaaagcgagcatccctacacaacgaagatttaatt
cgagaaaaagatgttaagcttggcgatacggtgatcgttaaaaaagcaggcgacattatt
cctgaagtcgttggtgtcattatagaaaagcgcactggaaaagaaattgattttcatatg
ccaacggaatgtccagaatgtaggagcgaactagaccggattgaaggcgaagtagcatta
cgctgtttgaatccgaaatgcccagcacaaattcgagaagggctgattcattttgtttca
agaaacgcgatgaatattgatggattaggtgaaaaagtcattagccagctgttctctcat
caattaatagccgatgtagccgatctttatacgttagaccgtgatgaactgcttgcactc
gaacggatgggggaaaaatccgtagacaatttgctcgatgcaatccaacgatcaaaagac
aattcacttgagcgtttattgtttggcttagggattcgttttgttggcgctaaagcggca
aaaaccctcgcattggcgtttgattcgatgggtaaccttcgtcaagcatctgtagatgag
ctgctgagtgtaaatgaaatcggcgaaaaaatggcagattcgattgtgtcttatttcgat
aaaccggaagtagatgagttacttgataaattgaagcaagcggaagtgaatatgcagtat
agaggtgcaagaccagtcatagagcaaagcgatcttgagtcgcctttcgttgggaaaaca
attgtattaacaggaaaattaagtcattggaaccgtaaagaagcccaagaaaaaatcgaa
gcacttggtggaactgtaacaggtagcgtcagtaagaaaaccgatattgttattgctgga
gaagatgccggctcaaagcagaaaaaagcggagagtcttggaattacgatttggacagaa
gcgaaatttgttcaaacaatggaagatttagattaa
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