Salinicoccus halodurans: AAT16_10245
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Entry
AAT16_10245 CDS
T03940
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shv
Salinicoccus halodurans
Pathway
shv03030
DNA replication
shv03410
Base excision repair
shv03420
Nucleotide excision repair
shv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AAT16_10245 (ligA)
03410 Base excision repair
AAT16_10245 (ligA)
03420 Nucleotide excision repair
AAT16_10245 (ligA)
03430 Mismatch repair
AAT16_10245 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shv03032
]
AAT16_10245 (ligA)
03400 DNA repair and recombination proteins [BR:
shv03400
]
AAT16_10245 (ligA)
Enzymes [BR:
shv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AAT16_10245 (ligA)
DNA replication proteins [BR:
shv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AAT16_10245 (ligA)
DNA repair and recombination proteins [BR:
shv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AAT16_10245 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AAT16_10245 (ligA)
MMR (mismatch excision repair)
DNA ligase
AAT16_10245 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AAT16_10245 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
Zn_ribbon_NUD
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AKG74534
UniProt:
A0A0F7HLN6
LinkDB
All DBs
Position
complement(1998032..2000002)
Genome browser
AA seq
656 aa
AA seq
DB search
MEEKIKELQDRLNRYNYEYHVLDNPSVPDSEYDKLLHELIALEEQYPEYRTDTSPTVRVG
GEVMSRFEKVAHDTPMLSLSNAFNAEELRAFDKRVREKVGEVDYMCELKIDGLAVSLKYE
EGRFVQGTTRGDGTVGENITSNLRTIKAIPLKIKNPLSFEVRGEAYMPKTSFERLNAAKE
EKGEGLFQNPRNAAAGSLRQLDPKLAAKRNLSVFLYSVNDLTELNAKTQSEAMDRLDQEG
FKTNRERRLADDIEAVIGYIEYWTHHRNALDYDIDGIVVKVNDIKKQDQMGFTAKSPRWA
IAYKFPAEEVVTDITDIELTVGRTGVITPTAILTPVKVAGTTVARASLHNHELIEQKDIR
INDKVVIRKAGDIIPEVVRPILEERTDQAVYEAPTECPGCGHDTIKLEDEVAIRCINPQC
PAQLVEGMIHFVSRGAMNIDGLGEKVVRQLFDAGLVRDISDIYALTYDDLIPLERMGDKK
VTNLLAAVEASKENPLRKLLVGLGIRFLGAKASELIAQEFGTMEEIMKQPAERFIEIPEI
GEKIASSIVTYTENPDFRALIDKLADFGVNMTEDKTEAKSTEFSAMTFVLTGRLEELTRG
EAKEMIENAGGKVTGSVSGNTDVVVAGAEAGSKLEKAQSLGVTVWDENEFIEKLGQ
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaaattaaagagctgcaggatagattgaaccggtataactatgaatatcat
gtgctcgataatccatccgttccagatagtgaatatgacaagcttttacatgaactgatt
gcacttgaagagcaatatccggagtacaggacagatacatcaccgaccgtaagagtcggc
ggggaagtcatgagccgctttgaaaaagtggcacacgacacaccgatgctgagcctttcg
aatgcatttaatgcagaagagctcagggcattcgataaaagagtgcgtgagaaggtcggc
gaagtggactacatgtgcgagcttaagatagacggcctggcagtatcccttaaatacgaa
gaggggcgttttgtccaggggacgacgcgcggagacggtacggtcggtgagaacatcacc
tcgaacttgaggacaatcaaggcaatcccgctgaagataaagaatccgttgtcattcgaa
gtccgtggcgaagcctatatgcctaaaacatcctttgaaaggctgaacgcagcaaaagag
gaaaaaggggagggactgttccagaatccgagaaacgccgcagcaggctctctcaggcag
ctggacccgaaacttgcagccaaaagaaatctttctgttttcctgtacagtgtcaatgat
ctgactgaactgaatgcaaaaacgcagagtgaggcaatggacaggcttgatcaggaagga
ttcaaaactaaccgggagcgcaggctcgcagatgatatcgaagcagtgatcgggtatata
gagtattggacgcatcatcgaaatgcactcgactatgatattgacggtatcgtagtcaaa
gtgaatgatatcaaaaagcaggatcagatgggattcacggccaaatctccgcgttgggcg
attgcctataaattccctgccgaagaagtggtcacggatattacagatatagaactgaca
gtcggacggaccggcgtcattactccgacagcgattctgacaccggtgaaggtggccgga
acgactgtggcaagagcgtcactccataaccatgaactgattgaacagaaagatatcagg
atcaatgataaagttgtcatcaggaaagctggagacatcataccggaagtggtccgcccg
attctggaagaacgtaccgatcaggcagtctatgaagcgccgactgaatgcccgggatgc
ggccatgacaccatcaagcttgaagatgaggttgccatccgctgtatcaacccccagtgc
ccggcacagcttgtcgaaggaatgattcactttgtatccagaggtgccatgaatatagac
gggctgggtgaaaaagtggtccgtcagctattcgatgcaggcctggtccgggatatcagt
gatatttatgccctgacttatgatgatttgattccgcttgagaggatgggagacaagaaa
gtcaccaatttgctggctgcggttgaagcatcaaaagaaaatcctctcaggaaactgctg
gtcggccttggaatcagattcttaggcgcgaaagcttcagaactcattgcacaggaattc
ggcaccatggaagaaattatgaagcaaccggcggagcggttcatagaaattcctgaaatc
ggggagaaaattgccagttcaatcgtgacgtacaccgagaatcctgacttcagggctctg
atcgacaagctggcagatttcggggtcaatatgacggaagataagacggaagcgaaaagt
acagagttttcggcaatgacattcgtcctgaccgggagactcgaagaactgacacgtggt
gaagcaaaagagatgattgaaaatgccggcggtaaagtaaccggaagtgtttcaggcaat
acggatgtagtagtggcgggtgcagaagcaggcagcaagcttgaaaaagcacagtcatta
ggtgtaactgtttgggacgagaatgaattcattgagaagttggggcagtga
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