Shewanella sp. W3-18-1: Sputw3181_0891
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Entry
Sputw3181_0891 CDS
T00453
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumB
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
shw
Shewanella sp. W3-18-1
Brite
KEGG Orthology (KO) [BR:
shw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shw03009
]
Sputw3181_0891
Enzymes [BR:
shw01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
Sputw3181_0891
Ribosome biogenesis [BR:
shw03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Sputw3181_0891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_15
Cons_hypoth95
Methyltransf_12
TRM5-TYW2_MTfase
Maelstrom
UPF0020
Motif
Other DBs
NCBI-ProteinID:
ABM23741
UniProt:
A1RGE6
LinkDB
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Position
1011634..1012803
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AA seq
389 aa
AA seq
DB search
MSAVIVNTVEQCGYFNRGQCQSCRHIQVPMAQQLMAKSLELQQLLKPFVAPSAAIFYPPV
TGEATAFRNKAKMVVLGAAHAPVLGIVSPSGEAVSLCDCLLYPSDMQKLLHRLTQFVQQA
GIPPYRVDKAKGELKFILLTRSQVRGEYLLRFVLRSHNSIERIERALPTLLAEYPQINVV
SVNIQPIHMAILEGDEEIFLTENTRLEERFNDVPLFIRPKSFFQTNPQVAAQLYQTAREW
VAEFAPKSLWDLFCGVGGFGLHCATKDIALTGIEIEAEAISCAQISANLMGLEKVQFMAL
DSTDFAQGKNAADKPDLIIVNPPRRGIGEALCQSLSEFAPRAILYSSCNPKTLAKDLEHI
QGYHLTKVQLFDLFPHTDHFEVLAMLVKD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgctgttattgtaaataccgtcgagcaatgtggttattttaatcgaggtcagtgt
caatcctgtcgccatattcaagtgcctatggcgcaacagttgatggctaaatccctagaa
ttacagcaattactcaaaccatttgtggcaccatccgcagctattttttaccctccagtg
actggcgaggcgacggcttttcgcaataaagccaaaatggtggtgttaggtgcggctcat
gcacctgtacttgggattgttagtccaagtggtgaggcggtaagtctttgtgattgctta
ctctatccatctgatatgcaaaagttattgcaccgtttaacgcaatttgtacagcaggcg
ggtattccgccgtatcgtgttgataaagcgaagggtgagcttaagtttattctgctaacg
cgtagccaagttcgcggcgaatatctactgcgttttgtattgcgctcgcacaatagtatt
gagcgtatcgagagagcattgcctacattactggccgaatacccacaaattaacgtggtt
tcagtcaatattcagcctattcatatggcgatccttgagggggatgaggaaattttctta
actgaaaatacccgcctcgaagagcgttttaacgatgtgcctttgtttattcgacctaaa
agttttttccaaaccaatcctcaagtcgctgcgcagttataccaaacagcccgtgagtgg
gttgctgagtttgctcctaagtcgctctgggatctcttttgcggagtcggtggctttggc
ttgcactgtgcgactaaggatatcgcgcttacaggcattgaaattgaagcagaggccatt
agttgtgcacaaatatcggctaacttgatggggcttgagaaggtgcaatttatggcgctt
gattcaactgattttgctcagggcaaaaacgccgccgataagcccgatttgattattgtc
aatccgccacggcgcgggattggagaggcattgtgtcaatccttaagcgagtttgcgcct
agggcgattctttattccagttgtaacccaaagaccttagctaaagatctcgagcacatt
caaggttatcacttaactaaagtgcaactgtttgatttatttccgcacacagatcacttc
gaagtattagccatgttagtgaaggattaa
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