Schistosoma haematobium (urinary blood fluke): MS3_00005494
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Entry
MS3_00005494 CDS
T05004
Symbol
BRCA1
Name
(RefSeq) Breast cancer 1, early onset
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
shx
Schistosoma haematobium (urinary blood fluke)
Pathway
shx03440
Homologous recombination
shx03460
Fanconi anemia pathway
shx04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
shx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
MS3_00005494 (BRCA1)
09124 Replication and repair
03440 Homologous recombination
MS3_00005494 (BRCA1)
03460 Fanconi anemia pathway
MS3_00005494 (BRCA1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
shx01009
]
MS3_00005494 (BRCA1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shx04121
]
MS3_00005494 (BRCA1)
03036 Chromosome and associated proteins [BR:
shx03036
]
MS3_00005494 (BRCA1)
03400 DNA repair and recombination proteins [BR:
shx03400
]
MS3_00005494 (BRCA1)
Enzymes [BR:
shx01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
MS3_00005494 (BRCA1)
Protein phosphatases and associated proteins [BR:
shx01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
MS3_00005494 (BRCA1)
Ubiquitin system [BR:
shx04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
MS3_00005494 (BRCA1)
Multi subunit type E3
BRCC complex
MS3_00005494 (BRCA1)
Chromosome and associated proteins [BR:
shx03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
MS3_00005494 (BRCA1)
DNA repair and recombination proteins [BR:
shx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
MS3_00005494 (BRCA1)
BRCA1-A complex
MS3_00005494 (BRCA1)
BRCA1-B complex
MS3_00005494 (BRCA1)
BRCA1-C complex
MS3_00005494 (BRCA1)
BRCA complex
MS3_00005494 (BRCA1)
FA (Fanconi anemia) pathway
Downstream FA components
MS3_00005494 (BRCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
Prok-RING_4
zf-C3HC4
zf-RING_5
zf-RING_2
zf-RING_UBOX
BRCT_2
zf-C3HC4_2
zf-rbx1
BRCT_3
YdjO
RTT107_BRCT_5
zf-Di19
zf-RING_10
U-box
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
24593416
NCBI-ProteinID:
XP_035585635
UniProt:
A0A6A5D2W2
LinkDB
All DBs
Position
3:30512462..30528305
Genome browser
AA seq
1323 aa
AA seq
DB search
MIDSLDDVQTPVVTPCSHIYCKFCMDKHFEKKRSASCPLCNKNLSSRSLKSSSKVVTVID
LCKKVISTYESEAKTKLVSRDLVGSLHLSQELTQVDVTASCVLPSSRNSEDFQVSGEESR
PRPRNRILLGTTARTQRTKQMNKQRSALPFEEVLTQPMHSLCASTEVKELSLPKQDVENH
DAFLDIFSLTQQTQPMIDSFDSGSLFAPVEGMGHTDFSDNTLVGHTTQKNESKPISKLLR
KASKRIKRSACLPPLPPVTRTTVLTRNSPEAASHSSVPSHNSVSLKRSSESPFANGKNSK
QCRRESNCSVLSGQGLVTKTHEVLCHVQPSENVCINTKGFNSLFNHEETKSKLDIEPIVP
HKPSSACNPKKRSHSFSGSLSHTSSVLVGKRLLQKYRSRPHRLSTTQHSVSTKSPGWSRW
RQMCRELRRRSSSLRITFHRSSSLVGKVGSKASEPHESRKIRTIRDFSRRSSLSSPGISL
PKWGRSVNRSRRRTSEKTVETPLPHGKQEDISDISLNIVQEHNTTSNKSQNGFSPVSRLT
KTDCPKETCHFIMPLRRLISRDYFHSKSLRSRLRSSLRQNEAAASPIIQVKSPHGYSAYK
CDLDSPEPRGQLNGSNISNTSYSAVDSCEIYCQPLHCSACGETLVLHTDINSANMISPGP
QFPELLLRPPVSILSSSMSSSYWQAEDPGDTIFTDAHLDALVEVNRRYISESDGDCNLKH
SSVSLPRNSYRSYLQTDSRDNALSHCEIQSGIKVPNLVEPSLKPYNSPTLPSNSSYSNAQ
PNRTDESEAIHGENIANSESPTEQHNDFSRFPDHSTFSTFQGSSSEIMPTVDRERLRHEC
EELEAVVAALQKQLEAQADELSPESTAEILKSACTEPLDDAPVGVTSFTECVPQQTHNEI
RMFPGSDVKHAIVSVEKLQTHEPMAIQSSPRLSQVLETCASETVDIIPSSQTEEEPENYH
IDVMDPPIISQPTVASSKPGQSNQNEWRNVTSPLNNSICDFIPGSLSASTQNIRDPISST
QNPMSNITQCPETNWSSCNTLVDENWPPKFSDKCQRNIAVTGSNLSPSDTALLRKFCLQF
SVSEHSRFIPQKTTHVVIKEEAGRPRVVKRTLKYFMGILNRAWIVNTDWVRECVTSKRLL
DESPYEIEGDTVCGDCHEGPRRGRLGVPAIPQSLDRLPFGNPSSRLNEAESSDRRPFSEL
WLCAYRNLGALQVADFCQLALDGGATRVFEKPSELMDATNKLTESLEITGTDVRKPRAVI
LTDKDSSEFNLQECQELYRVYGVPVISIEWMLNCISLYRRLPINQAYRICPTPQPVSVSI
SKS
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgattgatagtttggatgatgttcagactcctgttgtaacaccatgctctcatatttac
tgcaagttttgtatggataagcattttgagaagaaaagaagtgccagctgcccgctttgt
aacaagaatctttcttccaggtctttaaagagttcgagcaaagttgtaactgtaatcgac
ttatgcaagaaagttatatcgacttatgaatctgaagcaaaaactaaacttgtctcacgg
gaccttgtaggtagcttgcatctcagtcaggagctgacacaggtggatgtaactgcttca
tgtgtcttaccaagtagtagaaactctgaagattttcaagtcagcggtgaggagtcgcgc
cctcgacctcgcaatcgcattcttttgggcaccaccgcacgcacacaacggacaaagcaa
atgaacaagcagcgcagtgctttaccctttgaagaggttcttacacagccaatgcacagt
ttgtgtgcctctaccgaagtaaaagagcttagtttgccgaaacaagatgtagagaaccat
gatgcgttcctcgatatatttagtcttacacaacaaactcaaccgatgatagattcattc
gatagtggttcattgtttgcaccagttgaaggtatgggtcatacagacttttcagacaat
actcttgtaggtcacactactcaaaaaaatgaatcaaaacctatatcaaaattacttcgg
aaagcttcgaaaaggattaagcgttctgcatgtttgccgcctctcccaccagtcacgcga
actaccgttttgacgcgtaacagtccagaagctgcttctcacagttctgttccttcgcat
aactctgtgtcactgaaaaggtcatctgaatcaccgttcgcgaatgggaaaaacagtaaa
caatgtcggagagaatcgaattgttctgttttgtctggtcaggggttggttacgaaaacg
cacgaggttttgtgtcatgtacaaccgtcagaaaatgtatgtatcaacactaagggcttc
aacagtctcttcaaccatgaggaaaccaaaagtaagttggatatagaaccaatcgttccc
cataaaccatcgtcagcttgcaacccaaagaaacgttctcactcgttcagtgggtctttg
tctcatacttcgtcagtactagttggcaaacgcttgcttcaaaagtatcgtagtagacct
caccgtctgtcaacgactcagcatagtgtttctaccaaaagcccgggttggtctcgttgg
cgtcaaatgtgtcgcgaactgagacgtcgaagttcatcattgcgaataacatttcatagg
tcatctagtttggttggtaaagttggatcaaaagcttctgaaccacacgaaagtcgcaaa
atacgtactattagagatttttctagacgttcctccctttccagtcccggcatttctttg
cctaaatggggacgtagtgttaatcggagcagacgtaggaccagtgagaaaacagttgaa
actcctttacctcatggtaagcaagaagatatatccgatatttcacttaatatcgtccaa
gaacacaatacaacatcaaacaaatctcaaaatggtttcagtccagtatcgcgtttaaca
aaaacggattgtcctaaagaaacgtgtcattttattatgccattgcgacgtctgatttct
cgtgactactttcattcgaagtcactacgctctcgtcttcgttcttctctgcgtcaaaat
gaagctgctgcttctcctatcattcaggtcaagtcaccacatggttactctgcttataaa
tgtgatttggactctcctgaacctcgtggacagcttaacgggtctaacatctctaacaca
tcatattcagcagtggattcctgtgaaatttattgtcagcctttacattgtagtgcttgt
ggggagacgctagtattacatacagatatcaatagtgcaaatatgatatcgccaggacca
cagtttccggaattgctgctccgtccacctgtttccattctctcgagctccatgtcttcc
tcatattggcaggctgaagatccaggagatacaatctttacggatgctcatctagatgct
ctggttgaggtgaatcgccgttacatatcagaatctgatggagattgtaatctaaagcat
tctagtgtatctcttcccagaaattcctatagatcgtatctccaaacggattcgagagac
aatgcacttagtcactgtgaaatccaatctggtatcaaggttccaaatttagttgaacca
tcactaaaaccttacaactcacctacactaccgtcaaatagttcttacagtaatgctcaa
ccaaacagaactgatgagtcggaagcaatacatggtgaaaacatagcgaacagtgaatct
ccaaccgagcagcacaatgatttctctaggtttcctgatcattctaccttttccactttt
caaggtagcagtagtgagattatgccaaccgtggatcgtgagcgtttgcgtcacgaatgt
gaagagttggaagccgtagtcgcagctttacagaagcagttggaggctcaagctgatgaa
ctcagtcctgaatcaactgctgagatccttaaatcagcctgtacagaacctttagatgat
gctcctgttggtgtaacatcatttacagaatgtgttccacagcagactcacaatgaaata
cgaatgtttcctggtagtgatgtaaagcatgccatagtaagcgtcgaaaagcttcaaact
catgaaccaatggccattcagtcgtccccaagattgtctcaggttttagaaacttgtgct
tccgaaacggttgatattattccatcctctcaaacagaagaggaaccagaaaattatcat
atcgatgtaatggatccacctattatttctcagcctacggtagcaagttctaagcctggg
cagtcaaaccaaaatgaatggagaaatgtaaccagtcctctgaataattctatttgtgac
ttcattcctggttcattatccgcatctacacagaatattcgtgatcccatttcgtcaact
caaaatccaatgagtaatattacccagtgtccagaaacaaactggagttcatgtaacaca
ctcgtagatgaaaactggcccccaaagttttctgataaatgtcagcgaaatattgctgtt
acgggttccaatttatcgccttctgatactgctttactgcgtaaattttgtttacaattc
agtgtttcggaacacagtcgtttcattcctcaaaagacaactcatgtagtaattaaagaa
gaagcaggtcgtcctcgtgtagttaaacgaaccttaaaatactttatgggtattcttaat
cgagcatggattgtaaatactgactgggttcgtgaatgcgtgacatccaaaagacttctg
gatgagtcgccatatgagattgaaggagatacagtttgtggcgattgtcatgagggtcct
agacgtggtagacttggtgtaccagccattcctcaatctcttgacaggttacctttcgga
aatccctctagccgattgaatgaagctgaatccagtgatcgccgtccattttctgaactg
tggctctgtgcatatcgtaatttgggagctctacaagtggctgatttttgtcagttggca
ttagatggaggtgctacacgagttttcgaaaaaccttcggaattaatggatgcaaccaat
aaattgactgaatcgctggaaattacagggacagatgttcggaaaccgcgtgctgtaatt
cttacagacaaagattcttctgaattcaatcttcaagagtgtcaggagctctatcgagta
tacggtgtgcctgttataagtattgaatggatgctgaactgtatttcattatatcgtcgt
ttaccaattaatcaagcttatcgtatatgtccaactcctcaacctgtttctgtatctatt
tccaaatcttaa
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