Sphingobium xenophagum: CJD35_10420
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Entry
CJD35_10420 CDS
T05146
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
shyd
Sphingobium xenophagum
Pathway
shyd00300
Lysine biosynthesis
shyd00550
Peptidoglycan biosynthesis
shyd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
shyd00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CJD35_10420
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
CJD35_10420
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
shyd01011
]
CJD35_10420
Enzymes [BR:
shyd01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
CJD35_10420
Peptidoglycan biosynthesis and degradation proteins [BR:
shyd01011
]
Precursor biosynthesis
Amino acid ligase
CJD35_10420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
LpxD
Motif
Other DBs
NCBI-ProteinID:
ASY44817
UniProt:
A0A249MUJ5
LinkDB
All DBs
Position
I:2106970..2108415
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AA seq
481 aa
AA seq
DB search
MTRLAGLIDGLDAAVSAGAVLDANVTGFAIDNRKVAPGTVFGAFQGLRVNGEDYIADAVK
AGAIAVVARPEARVEGAIHIAHANPRRLFAQLAARYFAPFPDVTVAVTGTNGKTSTVELT
RQLWRMMGHHAASIGTLGVTTSVDQVSTGLTTPDIVTFLSNMSGLRREGVTHAAFEASSH
GLAQYRTEGLPVLAGGFTNLSRDHLDYHGDMDSYFDAKMRLFDKVVAADGAAVVWADDAW
SDKVIARVAARGLRLLSVGEKGEALRLVTRTPTQLGQTLGIEADGKTYKVNLPLIGAYQA
ANALTAAGLVIATGGDVAKVLELLGRVQPVRGRLERAVISKAGAPVYVDYAHTPDGLRAA
IEALRPHTKGKLIVLFGAGGDRDAGKRPLMGQVAAQLADHVIVTDDNPRSEEPSAIRAAV
MAGAAGAEEIGGRRAAIAAAIAQAGADDIVLLAGKGHEQGQIIGDRVLPFDDVTVARECA
G
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgccttgccgggctgatcgacgggctggacgcggctgtgagcgccggggcggtg
ctggacgccaatgtcaccggctttgcaatcgacaatcgcaaggttgcgcccggcacggtg
ttcggcgcctttcaggggctgcgcgtcaatggcgaggattacattgccgacgctgtgaag
gcgggggcgatcgcggtcgtcgcgcggccagaagccagggtcgaaggcgcgatccatatc
gcccacgccaatccgcgccgccttttcgcgcagcttgccgcacgctatttcgcgcccttt
cccgatgtgacggttgccgtcaccggcacgaacggcaagaccagcacggtcgaactgacc
cggcagctgtggcggatgatgggccatcatgccgcgtcgatcggcacgctgggcgtcacg
acatcggtggatcaggtgtcgacgggcctgaccacgccggacatcgtcactttcctgtcg
aacatgtcggggctgcgccgcgaaggcgttacccatgccgcgttcgaggcgtcgagccac
gggctggcgcaatatcgtaccgaagggctgccggtgctggcgggcggcttcaccaacctg
tcgcgcgaccatctcgactatcatggcgacatggacagctatttcgacgcgaagatgcgg
ctgttcgataaagtcgtggcggcggatggcgcggcggtggtgtgggcggacgatgcctgg
tcggacaaggtgattgcgcgggtggccgcgcgcggcctgcgcctgttgagcgttggcgag
aaaggcgaagcgctgcggctcgtcacgcgcacgccgacgcaattgggacagacgctgggc
attgaggcggacggcaagacatataaggtcaatctgccgctgatcggtgcctatcaggcg
gccaatgcgctgacggcggcgggcctggtgattgcgaccggcggggacgtggcgaaggtg
ctggaactgctgggccgggttcagccggtgcgcgggcggctggagcgcgcggtcatcagc
aaggcgggcgcgccggtctatgtcgattatgcccatacgcccgacggcctgcgcgccgcg
atcgaggcgctgcggccgcataccaagggcaagctgatcgtgctgttcggcgcgggcggg
gaccgcgatgcgggcaagcggcctttgatggggcaggtggcggcacagctggccgatcat
gtgatcgtgacggacgataatccacggtcggaggagccatccgcgatccgtgccgccgtg
atggcgggtgctgctggcgctgaggaaattggcgggcgacgcgcggcgattgcggcggcg
attgcgcaggcgggcgcggatgacatcgtgctgctggcgggcaaggggcatgagcagggc
cagattatcggcgaccgggtgctgcctttcgacgatgtgaccgtggcgcgggagtgcgcg
ggttga
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