Candidatus Sulfidibacterium hydrothermale: LA303_04030
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Entry
LA303_04030 CDS
T07944
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
shyr
Candidatus Sulfidibacterium hydrothermale
Pathway
shyr03030
DNA replication
shyr03410
Base excision repair
shyr03420
Nucleotide excision repair
shyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LA303_04030 (ligA)
03410 Base excision repair
LA303_04030 (ligA)
03420 Nucleotide excision repair
LA303_04030 (ligA)
03430 Mismatch repair
LA303_04030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shyr03032
]
LA303_04030 (ligA)
03400 DNA repair and recombination proteins [BR:
shyr03400
]
LA303_04030 (ligA)
Enzymes [BR:
shyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LA303_04030 (ligA)
DNA replication proteins [BR:
shyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LA303_04030 (ligA)
DNA repair and recombination proteins [BR:
shyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LA303_04030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LA303_04030 (ligA)
MMR (mismatch excision repair)
DNA ligase
LA303_04030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LA303_04030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH
Auto_anti-p27
Zn_ribbon_NUD
5_3_exonuc
Zn_ribbon_Top1
HHH_3
HGD-D
Motif
Other DBs
NCBI-ProteinID:
UBM63149
LinkDB
All DBs
Position
1030687..1033230
Genome browser
AA seq
847 aa
AA seq
DB search
MNRQEAKKRIDQLCDELREHNYRYYVLAQPVISDYEFDQKLKELETLEAQFPEFVRPDSP
TRRVGGEPVKDFPTVKHRYPMLSLANSYSLDEIRAFDARVRKAVGHEVDYVCELKYDGLS
ISLQYDQGLLVRAVTRGDGVQGDDVTNNVKTIRSIPLRLRGDYPPELEIRGEIFMPHAEF
ERLNREREEIGESLFANPRNAAAGSLKMQNPKEVAKRKLDAFLYYIPHELPGVKTHYQAL
KKAKTWGLKISDNMAICRNMEQITEYINDWDKGRRTLPYDIDGIVIKVNDLALQQQLGYT
AKSPRWAIAYKFKAEQVETILESIDFQVGRTGAITPVANLKPVQLAGTTVKRASLHNADI
IAQLDVRIGDTVYVEKGGEIIPKIVGVNLDKRPAGAQPVRFIEHCPECGTPLVRKEGEAA
HYCPNEDACPPQIKGKLEHFISRKAMNIKGLGKETIDILFEHKYLQNVASFYELKSYENN
LIGLEKTIIPTVYETPKVPLKKIIYAFKIGYRGMTLTNAEAIVNHFKNFRQYAQASLEEL
RKIENFRVNKTIDKEKVFYKIIEFFKNPFNHRIIEILLTEGDSIDGISLFTTLKLLEIPM
FSDDDLMLLVNNYDFIYLISKASYQELISIGLDDELAHSHQKFFSKKETKELVKNLNVLS
RTVLQKTSVKKILEGIEESKKVPFPRVLYALGIRHVGESTALMIAKQFRSIDNIIRASKE
ELLEIPAVGEEIAESIIQYFKEDKHLIIVNKLRNAGLQMEIKDDIVKTNILEGKTFLVTG
TLPNLKREQVKDLVEKNGGRFVSSVSSKTNYLIVGENPGSKLEKAKRLNIPILNEDDFLN
LLKHGNT
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgaacaggcaggaagccaaaaagcgaatagaccagctttgtgatgaattgcgggagcat
aactatcgttattatgtgttggctcaaccggtgatcagcgactatgaatttgaccagaaa
ctcaaagagctggaaacccttgaagcacaatttcctgagtttgtacgtcctgattcacct
acccgccgggtgggcggcgaacccgtgaaagattttccaacggtaaaacaccgttatccc
atgctttcgctggctaacagttattcccttgatgaaatcagggcatttgatgcccgggtc
cggaaagcagtagggcatgaagtagactatgtttgtgaactgaaatatgacgggctttct
atcagtcttcaatacgaccagggattattggtccgggcagtaacccggggtgacggcgta
cagggtgatgatgtgaccaataatgtaaaaaccatccggagtattccgttacggctgcgg
ggtgattatccgccagagctggagatccggggtgagatttttatgccccatgctgaattt
gagcgccttaaccgcgaacgtgaagagattggggagagcttgtttgctaatcctcgtaat
gcggcggccggttcccttaaaatgcaaaatcccaaagaagtggcaaaaagaaaactggac
gctttcttgtactatatccctcatgaattgcccggagtaaaaacccattatcaggcgttg
aaaaaagccaaaacctggggattgaaaatctcggataatatggcgatttgccggaatatg
gaacaaattaccgagtatattaacgattgggacaaaggccggaggacattgccttatgat
attgatggtatcgtaattaaggtgaacgatttggcactgcaacagcagttaggttatacg
gcaaaaagtccacgttgggccattgcttataaatttaaagcggaacaggtagaaactatt
ctggaatccattgattttcaggtgggacgtacgggcgccattacgccggtagcaaacctg
aaaccggtacaactggccggcaccacggtgaaacgggccagtttgcataatgcagatatt
attgcccagctggatgtccgtattggcgacacggtttatgtggaaaaaggcggagagatt
attccgaagatcgtaggggtaaatctggataaacgtcctgccggggcacaaccagttcgg
tttatagaacattgtccggaatgtggaacgcctcttgtccgaaaagaaggcgaagcagcc
cattattgtcctaacgaagatgcttgtccgccccagatcaaaggaaaactggagcatttc
atctcgcgaaaagcgatgaatataaaaggcttggggaaagaaactattgacatattattt
gaacataagtatttacagaatgttgcttctttttatgagttgaagagctatgaaaacaat
ttgattggtttagaaaagacaataattcctacggtatatgaaacccctaaagtacctctt
aaaaaaataatatatgcttttaagataggttaccgtggcatgactttgacaaatgctgaa
gctattgttaatcatttcaaaaattttcgacaatatgctcaagcaagtcttgaagaactt
agaaaaatagaaaattttagagttaataaaacgatagataaggagaaagttttttataaa
ataattgaattttttaagaacccatttaatcatcggataatagaaattcttttaactgag
ggtgattcaattgatggaatatcgttgtttactactctaaaattactagagattcccatg
ttttcagatgatgacctgatgcttttggtaaataattatgattttatttatttgatttct
aaggcgtcatatcaagaacttatttctattggtttggatgatgagttagcccattcacat
caaaagttcttttctaaaaaagaaaccaaagaattggttaagaatctcaatgttttaagt
cgaacagttcttcaaaaaacatctgttaagaaaattttagaaggaattgaagaatcaaaa
aaagttccttttccacgggtcttatatgcattgggaataagacatgttggagaatctact
gcgttaatgattgcaaaacaatttcggtcaattgataatattattcgggcatcaaaggaa
gaattattagaaattccagctgttggtgaagaaatcgcagaaagtattattcagtatttt
aaggaagataaacatttgattattgttaataagttgagaaatgctggccttcagatggag
attaaggatgatattgtaaaaaccaatattttggaaggaaaaacttttcttgtaacagga
actttgcctaatttaaaacgtgaacaggttaaagatcttgttgaaaaaaatgggggtaga
tttgtttcgtctgtttcttctaagacaaattatttgatcgttggggaaaatccgggttca
aaattggaaaaggctaaaagattgaatattcctatattgaatgaagatgattttcttaac
ttattaaaacatggaaatacctga
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