Streptococcus intermedius JTH08: SCIM_0894
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Entry
SCIM_0894 CDS
T02156
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sie
Streptococcus intermedius JTH08
Pathway
sie03030
DNA replication
sie03410
Base excision repair
sie03420
Nucleotide excision repair
sie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCIM_0894 (ligA)
03410 Base excision repair
SCIM_0894 (ligA)
03420 Nucleotide excision repair
SCIM_0894 (ligA)
03430 Mismatch repair
SCIM_0894 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sie03032
]
SCIM_0894 (ligA)
03400 DNA repair and recombination proteins [BR:
sie03400
]
SCIM_0894 (ligA)
Enzymes [BR:
sie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCIM_0894 (ligA)
DNA replication proteins [BR:
sie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCIM_0894 (ligA)
DNA repair and recombination proteins [BR:
sie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCIM_0894 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCIM_0894 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCIM_0894 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCIM_0894 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Ribosomal_L33
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
BAM23548
LinkDB
All DBs
Position
complement(1028299..1030257)
Genome browser
AA seq
652 aa
AA seq
DB search
MKDRMLELVNLLNQYAHEYYTTDNPSVSDSEYDRLYHELLDLEQQYPELVQADSPTHRVG
GKVLEGFEKYQHQYPLYSLQDAFSREELEAFDVRIRKDFPKVSYLCELKIDGLSISLMYE
NGILVAGATRGDGSVGENITENLKRVKDIPLVLPTAVNLTVRGECYMPRSSFDRVNRLRQ
ENGESEFANPRNAAAGTLRQLDTAIVAKRNLATFLYQEVSPTDMASQDAVLKKLSKNGFS
VNEQYILADSMDEVWEFIEKINQERKQLPYDIDGVVVKVNDLAMQEELGFTVKAPKWAIA
YKFPAEEKEAQLLSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRKD
DTVIVYKAGDIIPAVLRVVEGKRQSEDKIEIPKYCPSCGSELIHFEDEVALRCINPRCPA
QIKEGLIHFASRDAMNIAGLGPAVVEKLFDQQLVKDVAGIYRLTVNDLLQLENFKEKSAN
KLYTAIQTSKENSAEKLLFGLGIRHVGSKASQILLEHFHDLEQLAKATREEVAALDSLGM
VIAESLTSYFAQEGTQILLEELKEVGINLAYLGKKVSADAALSGLIVVLTGKLERLNRSE
AKAKLESLGAKVTSSVSKKTSLVVAGADAGSKLTKAQELGIDIRDESWLENL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacagaatgttagaactggtgaacctactaaatcaatatgcgcatgaatattat
acaacggataatccaagcgtatcagatagtgaatatgataggttatatcatgaattgtta
gatttagaacagcaatacccagagctcgttcaggctgatagcccaactcatcgcgtgggt
ggtaaggttttagaagggtttgaaaaataccaacatcagtatccgctatatagtttgcag
gatgctttttcacgtgaagagttagaggcatttgatgtacggattcgcaaagattttcca
aaggtgagttatctgtgcgagttaaaaattgatggtctctccatttctcttatgtatgaa
aatggcattttggttgcaggagccactcggggagacggctctgtcggagaaaatatcaca
gaaaatttaaaaagagtcaaagatattccattagtcttgccaactgctgtaaatctgaca
gttcgtggtgaatgttatatgccacgtagttcctttgatagggtgaaccgattgcggcaa
gaaaacggggagtcggaatttgcaaatccaagaaatgctgcagcaggaacgttacgccag
ttagatactgcaattgtagccaaacgtaatcttgcaacctttctctatcaagaagttagt
ccaacagacatggcgagccaagatgctgttttaaagaagttatctaaaaatggatttagt
gtgaatgaacagtatattttggctgattcgatggatgaagtatgggaattcatagaaaaa
atcaatcaagaacggaaacaattaccttatgatattgatggagttgtagttaaagtaaat
gatttggcaatgcaggaggagttaggttttactgtaaaagcacctaaatgggcgattgct
tacaagtttccggccgaagaaaaagaagctcaacttttatcagttgattggacggttggg
cgaactggagtggttacaccgactgctaatctaacacctgtgcaactagcaggtacgaca
gtcagtcgagcaactctgcacaatgtcgattacattgctgaaaaagatattcgtaaagac
gatacagttatcgtttataaggcgggtgatattatccctgctgttttgagagttgttgaa
ggtaaacgtcaatcagaggataagattgaaattcctaagtattgtccgagttgtggcagt
gaactgattcattttgaagatgaggttgccttgcgttgtatcaatccacgatgtcctgca
caaatcaaagaaggtttaattcattttgctagtcgtgatgccatgaatatcgcaggtctt
ggtccggctgttgttgaaaagttatttgatcagcaactggtaaaagatgtggctggtatt
taccgtttgactgtaaatgatttgttgcaattggagaattttaaggaaaaatcagctaac
aaattatatactgctattcaaacttctaaggaaaattctgctgagaaattattattcggc
ttaggtattcgccatgttggaagtaaagctagtcagattttactagagcattttcatgac
ttggagcagttagcaaaagcaactagagaagaagttgctgcactggatagcctaggaatg
gtaattgcagaaagcttaactagttattttgctcaggaaggcacacagattctattggaa
gaattgaaagaagtgggaattaatttagcttacctaggtaaaaaggtttcagcggatgcg
gctctttctggattaattgttgtgttaacagggaaattagagcgactaaatcgctcagaa
gcaaaagcaaaattagaaagtttaggtgcaaaggtaacgagctctgtttctaaaaaaaca
agtttagtcgttgctggagcagatgcaggaagtaaattaacaaaagctcaagagttagga
attgacattcgtgatgaatcttggcttgagaacttgtag
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