Scardovia inopinata: SCIP_0487
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Entry
SCIP_0487 CDS
T03977
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sij
Scardovia inopinata
Pathway
sij03030
DNA replication
sij03410
Base excision repair
sij03420
Nucleotide excision repair
sij03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCIP_0487
03410 Base excision repair
SCIP_0487
03420 Nucleotide excision repair
SCIP_0487
03430 Mismatch repair
SCIP_0487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sij03032
]
SCIP_0487
03400 DNA repair and recombination proteins [BR:
sij03400
]
SCIP_0487
Enzymes [BR:
sij01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCIP_0487
DNA replication proteins [BR:
sij03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCIP_0487
DNA repair and recombination proteins [BR:
sij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCIP_0487
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCIP_0487
MMR (mismatch excision repair)
DNA ligase
SCIP_0487
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCIP_0487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
DUF7574
BRCT_2
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
BAR06554
LinkDB
All DBs
Position
620161..622608
Genome browser
AA seq
815 aa
AA seq
DB search
MSLTDLIDSLERTDADAQKLKDLNVADLDTSQAAHLWAKVASWVEDDQLAYYVNDSPISS
DAAYDERMKTLQRLEAHFPQLDNPQSLTHRVGGTFSNDFASVRHPSPMMSLDDVFSLQEL
KSWYQGVRDDLEWPSSQPLPMTCEVKIDGLALNLIYRKGILEQGLTRGDGIVGEDITMNV
RTISSIPTQLTGKAEDIPDLVEIRGEVFMRFDDFTRLNDQAEREGKAPFANPRNAAAGSL
RQKDPRITASRHLSFYAHGIGSLVWPQGSNHPSIERQSQAYDLYAAWGIPVSTHTRQARS
FTDITDMISYYGEHRYSIEHALDGIVVKIDDLALQRRLGSTARAPRWATAYKYPPEEVNT
DLIDITVQVGRTGRVTPVAHLKPVKVAGSTVSRTTLHNAYEVERKGILIGDLVVVRKAGD
VIPELVGPVVAARPDRKSQLRPFLMPKTCPSCGALLAPEKEGDKDIRCPNVESCPAQLAN
RVLHLASRQAFDIEHLGEQSALALTNPENNRPDSVAEYYPDKKEILLKPGQETPDYQPPE
GLQLPDPQQPVLTSEADLFSLKPEDLRQVRTWHEIPLVEVSYVEDPQTGTTHKIHRNVGG
SGLWTQQPAFFNLPKKGQKISDAQPSRTTLAMFEEFDKAKRADLWRVLVALSIRHVGAPT
ARLLSRKFKTLQALSQASVEDLLQVDGVGEEIAQSIERWFSHARDPQDWRGKILRSWTAA
GIGQQAAEENTAEQTLTGKTVVVTGTLEDFSRESAKEAIEERGGKASGSVSKKTSYVVVG
ASAGSKAVKAQELGIPMLDEDQFKALLETGQYEEA
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgacagatcttatcgattcattggaacgtaccgatgctgacgcacaaaaactc
aaggatctgaatgtggctgacctggataccagccaggcagcgcatctgtgggcaaaggtg
gcttcctgggttgaggatgatcagcttgcttactatgtcaatgattctcctatctcctcc
gatgcggcttatgacgagcgcatgaagactctgcaaaggctggaggcacactttccccag
ctggataatccccagtctctcactcacagggtgggagggaccttctccaacgattttgct
tctgtccgtcatccttcccccatgatgagtctggatgatgttttttccttgcaagaattg
aaatcctggtaccagggggtcagggatgatctggaatggccttcttcccaacccctgccc
atgacctgtgaagtgaagattgatggtttggccctaaatctgatatatcgcaagggaatc
ctggaacagggcctgacccggggggatgggattgttggtgaagatatcaccatgaatgtt
cgtactatatcttccattcccactcagctgacagggaaggcggaagacattcctgatctg
gtggaaatcaggggagaagtctttatgcgttttgatgatttcacccgtctgaatgaccag
gcagaaagggaaggcaaagctccttttgccaacccccgcaatgcagctgccggatctctg
cggcaaaaggatccgcgcatcactgccagcaggcatctcagcttttatgcccacgggata
ggatccctggtttggcctcagggaagtaaccatcccagcattgagcgccagtctcaagcc
tatgatttgtatgctgcctgggggattcctgtgtccacccatacacggcaagcaaggtcc
tttacagatattactgatatgatctcctattacggggaacatcggtattccattgagcac
gccctggatgggattgtggtcaagatcgatgacctggccctccaacgccgacttggttct
accgcccgtgcaccccgatgggcaaccgcttataaatatcctcccgaagaagttaacacc
gatctgattgacattacggtacaggtgggcagaactggccgcgttacccctgttgctcat
ctgaagccggtgaaagtggccggatcgactgtttcccgtacaactctccataatgcttat
gaggtggagagaaaaggaattttgataggggacctggtggtggttcgcaaggctggagat
gtaattcctgaattggtgggaccggttgtggcagcgcggccggacaggaagagccaattg
cggccctttcttatgccaaaaacttgtccttcgtgcggagccctcctggctccagagaag
gagggagacaaggatatccgctgtcccaatgtggaatcctgcccggctcagctcgctaac
cgtgttcttcatttagcttcacgtcaggcctttgatattgagcacttaggtgaacagtct
gccctggctttgactaacccggagaataacaggcctgattcggttgctgaatactatccg
gataagaaggagattctgttgaagcctggccaggaaactccggattatcagcctccggag
ggtttgcagctgcctgatccccagcagccggttctgaccagcgaagctgatctgttctcg
ctgaaaccggaagatctccgtcaggtgcgtacttggcacgaaattcccctggtggaagtt
tcctatgtagaagatccccagacggggacgacccataagatccacagaaatgtgggagga
tctggtttgtggactcagcagcctgccttttttaatctgcctaaaaaaggacagaaaatc
agcgacgctcagccttcacgcaccactctggccatgttcgaagaatttgacaaggctaag
cgtgctgatttgtggcgggttctggtggccctgtccatccgacatgtaggtgcccccacc
gccagacttctatccaggaaatttaagactcttcaggccttgtctcaggcatctgttgag
gatcttttgcaggtagatggagtgggagaagagatagctcagtcgattgaacgctggttt
tctcatgctcgggaccctcaggattggagggggaagattctgcgctcctggactgctgcc
ggcataggtcagcaggcggctgaagaaaatacagctgagcagacgttgacaggaaaaaca
gtggttgttaccggaaccctggaagacttttccagggaatcagcaaaggaagccattgag
gaacgaggaggcaaggcctcgggatcggtcagcaaaaaaacgtcctatgtggtcgtgggg
gcatcagctggctctaaggctgtcaaggctcaagagctgggaataccaatgctggatgaa
gatcagtttaaggccctgctggaaacgggccagtatgaggaagcataa
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